top: Get the N most abundant clonotypes
In immunomind/immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires
View source: R/preprocessing.R
top R Documentation
Get the N most abundant clonotypes
Description
Get the N most abundant clonotypes
Usage
top(.data, .n = 10)
Arguments
.data
The data to be processed. Can be data.frame,
data.table, or a list of these objects.
Every object must have columns in the immunarch compatible format.
immunarch_data_format
Competent users may provide advanced data representations:
DBI database connections, Apache Spark DataFrame from copy_to or a list
of these objects. They are supported with the same limitations as basic objects.
Note: each connection must represent a separate repertoire.
.n
Numeric. Number of the most abundant clonotypes to return.
Value
Data frame with the .n most abundant clonotypes only.
Examples
data(immdata)
top(immdata$data)
top(immdata$data[[1]])
immunomind/immunarch documentation built on March 20, 2024, 12:01 p.m.
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View source: R/preprocessing.R
| top | R Documentation |
Get the N most abundant clonotypes
Description
Get the N most abundant clonotypes
Usage
top(.data, .n = 10)
Arguments
.data |
The data to be processed. Can be data.frame, data.table, or a list of these objects. Every object must have columns in the immunarch compatible format. immunarch_data_format Competent users may provide advanced data representations: DBI database connections, Apache Spark DataFrame from copy_to or a list of these objects. They are supported with the same limitations as basic objects. Note: each connection must represent a separate repertoire. |
.n |
Numeric. Number of the most abundant clonotypes to return. |
Value
Data frame with the .n most abundant clonotypes only.
Examples
data(immdata)
top(immdata$data)
top(immdata$data[[1]])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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