vis.immunr_inc_overlap: Visualise incremental overlaps

In immunomind/immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Visualise incremental overlaps

Description

Visualise incremental overlaps

Usage

## S3 method for class 'immunr_inc_overlap'
vis(.data, .target = 1, .grid = FALSE, .ncol = 2, ...)

Arguments

.data	Output from the repOverlap function that uses "top" methods.
.target	Index of a repertoire to plot. Omitted if .grid is TRUE.
.grid	Logical. If TRUE then plot all similarities in a grid.
.ncol	Numeric. Number of columns in the resulting grid.
...	Not used here.

Value

A ggplot2 object.

See Also

repOverlap

Examples

data(immdata)
tmp <- repOverlap(immdata$data[1:4], "inc+overlap", .verbose.inc = FALSE, .verbose = FALSE)
vis(tmp, .target = 1)
vis(tmp, .grid = TRUE)

immunomind/immunarch documentation built on March 20, 2024, 12:01 p.m.