vis_immunr_kmer_profile_main: Visualise kmer profiles

In immunomind/immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Visualise kmer profiles

Description

Visualise kmer profiles

Usage

vis_immunr_kmer_profile_main(.data, .plot, ...)

Arguments

.data	Kmer data, an output from kmer_profile.
.plot	String specifying the plot type: - "seqlogo" for traditional sequence logo plots using vis_seqlogo; - "textlogo" for modified approach to sequence logo plots via text labels using vis_textlogo;
...	Other arguments passed to vis_textlogo or vis_seqlogo, depending on the ".plot" argument.

Value

A ggplot2 object.

Examples

data(immdata)
getKmers(immdata$data[[1]], 5) %>%
  kmer_profile() %>%
  vis("seqlogo")

immunomind/immunarch documentation built on March 20, 2024, 12:01 p.m.