API for insilico/Rinbix
Insilico Bioinformatics Toolbox
| Global functions | |
|---|---|
| .onAttach | Source code |
| EpistasisKatz | Source code |
| EpistasisRank | Source code |
| PageRank | Source code |
| adjacencyMatrixToChordDiagram | Source code |
| adjacencyToNetList | Source code |
| classifyConfusionMatrix | Source code |
| classifyOneVarWeka | Source code |
| classifyPairWeka | Source code |
| classifyPredictFold | Source code |
| classifyPredictedValues | Source code |
| classifyRnaseq | Source code |
| createDiffCoexpMatrix | Source code |
| createDiffCoexpMatrixNoME | Source code |
| createDiffCoexpMatrixNull | Source code |
| createMainEffectsMatrix | Source code |
| createRandomMatrix | Source code |
| createRandomRegressionDataset | Source code |
| crossValidate | Source code |
| dcgain | Source code |
| dcgainInbix | Source code |
| dmgain | Source code |
| filterRnaseq | Source code |
| fisherRtoZ | Source code |
| fitInteractionModel | Source code |
| fitMainEffectModel | Source code |
| gainToSimpleSIF | Source code |
| geneLowCoefOfVarFilter | Source code |
| geneLowValueFilter | Source code |
| geneLowVarianceFilter | Source code |
| geneRank | Source code |
| geneSymbolToEntrezID | Source code |
| getFoldChange | Source code |
| getFoldChangeME | Source code |
| getGOAnalysis | Source code |
| getIGraphStats | Source code |
| getInteractionEffects | Source code |
| getMainEffects | Source code |
| getReactomePathways | Source code |
| glmMainEffect | Source code |
| glmVarList | Source code |
| glmWithInteractionTerm | Source code |
| glmWithSquaredTerms | Source code |
| igraphToChordDiagram | Source code |
| inbixExists | Source code |
| leftMaxEigen1 | Source code |
| leftMaxEigen2 | Source code |
| leftMaxEigen3 | Source code |
| loadRipmResultsFromRdata | Source code |
| logSpiral | Source code |
| lookupGeneDescBiomart | Source code |
| lookupGenesFromEnsemblIds | Source code |
| mapSNPsToGenesBiomart | Source code |
| mergeSumPowers | Source code |
| modularity | Source code |
| modularityBestSplit | Source code |
| modularityInbix | Source code |
| netListToForceD3 | Source code |
| netListToSimpleD3 | Source code |
| permuteGainInbix | Source code |
| predictRnaseq | Source code |
| prepareAdjacencyMatrix | Source code |
| preprocessRnaseq | Source code |
| printIGraphStats | Source code |
| r2VIMorig | Source code |
| randomNetworkSim | Source code |
| rankDcgainSnprank | Source code |
| rankDeseq | Source code |
| rankDeseq2 | Source code |
| rankEdgeR | Source code |
| rankEdgeRGlm | Source code |
| rankGeneRank | Source code |
| rankGlmnet | Source code |
| rankIterativeRelieff | Source code |
| rankLasso | Source code |
| rankLimma | Source code |
| rankRandomForest | Source code |
| rankRegainSnprank | Source code |
| rankReliefSeqInbix | Source code |
| rankRelieff | Source code |
| rankTTest | Source code |
| rankUnivariateRegression | Source code |
| readInbixNumericAsRegressionData | Source code |
| readPlinkBinary | Source code |
| regain | Source code |
| regainInbix | Source code |
| regainParallel | Source code |
| ripM | Source code |
| ripMKernelStack | Source code |
| ripmVariableModuleAssignments | Source code |
| saveModuleListGmt | Source code |
| saveRipmModules | Source code |
| saveRipmResultsToRdata | Source code |
| saveSimAsInbixNative | Source code |
| scaleAB | Source code |
| scaleFreeSim | Source code |
| simCorrMatrix | Source code |
| simCorrMatrixNonUniform | Source code |
| snprank | Source code |
| snprankInbix | Source code |
| sumOfPowers | Source code |
| writeRegressionDataAsInbixNumeric | Source code |
