paperRealWorkflow: Runs the four comparison algorithms on the passed correlation...

In insilico/privateEC: Privacy Preserving Evaporative Cooling Feature Selection and Classification with Relief-F and Random Forests

Description

Runs the four comparison algorithms on the passed correlation matrix and phenotypes. Returns a data frame of run results for each.

Usage

paperRealWorkflow(
  real.data = NULL,
  label = "class",
  update.freq = 50,
  verbose = FALSE
)

Arguments

real.data	A matrix subject by region-pair correlations augmented with class label
label	A character vector class label from columns of corr,mat
update.freq	A integer for the number of steps before update
verbose	A flag indicating whether verbose output be sent to stdout

Value

A list containing:

run.results

data frame of run results of each sim type

elapsed

total elapsed time

See Also

The workflow consists of the sequence: privateEC originalThresholdout privateRF standardRF and compileAndSaveAllResults. A comparison analysis with simulated data is in paperSimWorkflow.

Other workflows: compileAndSaveAllResults(), paperSimWorkflow(), plotRunResults()

Examples

  data(rsfMRIcorrMDD)
  real.result <- paperRealWorkflow(real.data = rsfMRIcorrMDD[, 2900:ncol(rsfMRIcorrMDD)],
                                   label = "class",
                                   update.freq = 50,
                                   verbose = FALSE)

insilico/privateEC documentation built on May 22, 2020, 5:12 p.m.