read_gadget_aux_files: Read auxiliary Gadget files (i.e. data files, aggfiles,...

In inspktrgadget/gadgetSim: Create Gadget replicates for use in simulation studies

Description

This suite of functions are specific to types of Gadget auxiliary stockfiles, with special attention paid to the various auxiliary stockfiles such as refweightfile, initial condition and renewal data distribution files, spawnfile, etc. These functions are for use in check_stockfile

Usage

read_gadget_refweightfile(file, path = NULL)

read_gadget_stock_len_aggfile(file, path = NULL)

read_gadget_preylengths(file, path = NULL)

read_gadget_init_cond(file, data_dist_type, path = NULL)

read_gadget_yearstepfile(file, path = NULL)

read_gadget_migration_file(file, migration_type, path = NULL)

read_gadget_maturity_file(file, mat_fun_type, path = NULL)

read_gadget_renewal(file, data_dist_type, path = NULL)

read_gadget_spawnfile(file, path = NULL)

read_gadget_strayfile(file, path = NULL)

format_auxiliary_file(aux_file, aux_names)

format_data_dist_file(data_dist_file, data_names)

Arguments

file	Character. The name of the file to be read
path	Optional. Character vector of path to the directory where Gadget files are located

Value

Typically a list with the elements specific to what is needed for each type of auxiliary file. Aggfiles and data files will often return a data.frame

Examples

gad_data <- read_gadget_refweightfile("Modelfiles/cod.refweightfile",
                                      path = gad_mod_dir)

inspktrgadget/gadgetSim documentation built on May 10, 2019, 9:51 a.m.