parBE.B.deviation: Parallel backward elimination of B-deviation

In isglobal-brge/MAD: Mosaic Alteration Detector(MAD)

Description

Parallel backward elimination of B-deviation

Usage

parBE.B.deviation(x, Samples, T, MinSegLen, verbose = TRUE, mc.cores = 1,
  ...)

Arguments

x	an object of class 'parGADA' obtained using 'setupParGADA.B.deviation' function
Samples	the samples to be analyzed (obtained from 'x' by default)
T	critical value of the backward elimination algorithm (see 'BackwardElimination' function)
MinSegLen	minimum number of probes each segment must contain (see 'BackwardElimination' function)
verbose	is information about each individual showed in the console? Default is TRUE
mc.cores	number of cores to be used when using multiple cores (see argument 'mc.cores' from 'mclapply' function of parallel library)
...	other arguments passed through the function 'BackwardElimination'

Value

a 'GenomicRange' object having mosaic alterations

isglobal-brge/MAD documentation built on April 21, 2020, 3:26 p.m.