setupParGADA.B.deviation: A parallel version of setupGADA.B.deviation function

Description Usage Arguments

View source: R/setupParGADA.B.deviation.R

Description

A parallel version of setupGADA.B.deviation function

Usage

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setupParGADA.B.deviation(folder, files, chrs = c(as.character(1:22), "X",
  "Y"), verbose = TRUE, sort = TRUE, MarkerIdCol = 1, ChrNameCol = 2,
  ChrPosCol = 3, mc.cores = 1, ...)

Arguments

folder

The folder where data is stored. Not required if the working directory contains a 'rawData' folder

files

The names of the files with pennCNV-format fiels. Not required. By default all files in the 'rawData' folder are analyzed

chrs

The names of the chromosomes. Default 1, ..., 22, X, Y

verbose

Should information about process be printed in the console? The default is TRUE

sort

Should data be sorted by genomic position? Default is TRUE

MarkerIdCol

The column in 'file' containing the name of the marker. Default first column

ChrNameCol

The column in 'file' containing the chromosome. Default second column

ChrPosCol

The column in 'file' containing the genomic position. Default third column

mc.cores

number of cores to be used when using multiple cores (see argument 'mc.cores' from 'mclapply' function of 'parallel' library)

...

Other arguments passed through 'setupGADA'


isglobal-brge/MAD documentation built on April 21, 2020, 3:26 p.m.