View source: R/setupParGADA.B.deviation.R
A parallel version of setupGADA.B.deviation function
1 2 3 | setupParGADA.B.deviation(folder, files, chrs = c(as.character(1:22), "X",
"Y"), verbose = TRUE, sort = TRUE, MarkerIdCol = 1, ChrNameCol = 2,
ChrPosCol = 3, mc.cores = 1, ...)
|
folder |
The folder where data is stored. Not required if the working directory contains a 'rawData' folder |
files |
The names of the files with pennCNV-format fiels. Not required. By default all files in the 'rawData' folder are analyzed |
chrs |
The names of the chromosomes. Default 1, ..., 22, X, Y |
verbose |
Should information about process be printed in the console? The default is TRUE |
sort |
Should data be sorted by genomic position? Default is TRUE |
MarkerIdCol |
The column in 'file' containing the name of the marker. Default first column |
ChrNameCol |
The column in 'file' containing the chromosome. Default second column |
ChrPosCol |
The column in 'file' containing the genomic position. Default third column |
mc.cores |
number of cores to be used when using multiple cores (see argument 'mc.cores' from 'mclapply' function of 'parallel' library) |
... |
Other arguments passed through 'setupGADA' |
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