Man pages for isglobal-brge/rexposome
Exposome exploration and outcome data analysis

classification-methodsMethod to get the classification of the samples from an...
clustering-methodsMethod to perform clustering on the samples of an ExposomeSet
correlation-methodsCreation of an ExposomeCorr from an ExposomeSet.
ex_imp'imExposomeSet' for testing purpouses
expo'ExposomeSet' for testing purpouses
expo_c'ExposomeClust' for testing purpouses
expos-methodsReturns the exposures matrix of an ExposomeSet.
ExposomeClust-classClass ExposomeClust
ExposomeCorr-classClass ExposomeCorr
ExposomePCA-classClass ExposomePCA
ExposomeSet-classClass ExposomeSet
exposureNames-methodsGetter to obtain the exposures's names of an ExposomeSet or...
ExWAS-classClass ExWAS
exwas-methodsTesting the association between an exposure and a phenotype...
familyNames-methodsGetter to obtain the exposures's names of an ExposomeSet.
highAndLow-methodsFunction to convert continuous exposures to categorical...
ilod-methodsFunction to impute under-LOD values from an ExposomeSet
imExposomeSet-classClass imExposomeSet
imputation-methodsFunction to impute missing values from an ExposomeSet
imputeLODFunction to impute values under limit of detection
loadExposomeCreation of an ExposomeSet from 'data.frames'
loadImputedCreation of an imExposomeSet from 'data.frames'
me'data.frame' for testing purpouses
mExWAS-classClass mExWAS
mexwas-methodsTesting the association between an exposure and a phenotype...
ndim-methodsNumber of principal components in an ExposomePCA.
normalityTest-methodsIt creates a 'data.frame' of boolean indicating if the...
pca-methodsCreation of an ExposomePCA from an ExposomeSet.
phenotypeNames-methodsGetter to obtain the phenotype's names of an ExposomeSet or...
plot3PCA-methodsPloting PCA in a 3D space
plotClassification-methodsDraw the profile of the levels exposures after a...
plotCorrelation-methodsIt draws both circos or matrix plot for the correlation in...
plotEffect-methodsFunction to draw a plot of the pvalues stored in an 'ExWAS'...
plotEXP-methodsPlot correlation between exposures and PCA
plotExwas-methodsFunction to draw a plot of the pvalues stored in an 'ExWAS'...
plotFamily-methodsIt draws the profile of the exposome in an ExposomeSet
plotHistogram-methodsIt draws a histogram for each exposure in an ExposomeSet
plotLOD-methodsIt draws a chart with the percentage of under-LOD values in...
plotMissings-methodsIt draws a chart with the percentage of missing in an...
plotPCA-methodsPloting PCA
plotPHE-methodsPlot association score between phentoypes and PCA
plotVolcano-methodsFunction to draw a plot of the pvalues stored in an 'ExWAS'...
readExposomeCreation of an ExposomeSet from files
rexposomerexposome: Package for exposome exploration and outcome data...
standardize-methods#' Summary of an ExposomeSet. #' #' Given an ExposomeSet is...
tableLOD-methodsIt creates a vector with the amount of under-LOD exposures in...
tableMissings-methodsIt creates a vector with the amount of missing in an...
tef-methodsFunction to get the Threshold for effective tests (TEF)
toESMethod to convert an imExposomeSet to an ExposomeSet
trans-methodsFunction to apply a transformation to the exposures of an...
volcano_plotFunction to draw a Volcano Plot
isglobal-brge/rexposome documentation built on Oct. 22, 2017, 12:03 p.m.