ExposomeClust-class: Class ExposomeClust

In isglobal-brge/rexposome: Exposome exploration and outcome data analysis

Class ExposomeClust

Description

Class ExposomeClust obtained from clustering on an ExposomeSet object, represents the groups of samples created applying a clustering method on the ExposomeSet' exposures.

Usage

## S4 method for signature 'ExposomeClust,ANY'
plot(x, y, ...)

## S4 method for signature 'ExposomeClust'
classification(object)

## S4 method for signature 'ExposomeClust'
plotClassification(object, type = "heatmap", ...)

## S4 method for signature 'ExposomeClust'
sampleNames(object)

Arguments

x	Object of class ExposomeClust
y	NOT USED
...	Argument given to heatmap.2
object	An object of class ExposomeClust
type	(default "heatmap") Type of plot.

Value

An object of class ExposomeClust

Methods (by generic)

• plot(x = ExposomeClust, y = ANY): Wrapper for plotClassification method.

• classification(ExposomeClust): Return classe asigned to each sample

• plotClassification(ExposomeClust): Draws a heatmap for the samples' classification.

• sampleNames(ExposomeClust): Method to obtain samples' names

Slots

model

Result obtained on applying method on the exposures.

method

Function used to perform the clustering of the exposures.

call

Call used to create this object.

samples

Name of the exposures after the clustering process.

See Also

clustering to apply a clustering on an ExposomeSet and create an ExposomeClust.

isglobal-brge/rexposome documentation built on Feb. 4, 2023, 12:35 p.m.