Man pages for isglobal-brge/snpfier
Get inversion status in predefined regions
| adaptRefs | Adapt references to imputed data |
| checkSNPs | Check genotype object |
| classifSNPs | Get similarity scores and probability |
| computeScore | Compute all similarity scores for a sample |
| correctAlleleTable | Solve genotypes discrepancies |
| getAlleleTable | Compute the allele table |
| getGenotypesTable | Get genotypes table |
| getInvStatus | Get the inversion status of a sample |
| hetRefs | Heterozygote genotypes in the references |
| info | SNP reference description |
| inversionGR | Inversions' description |
| prepareMap | Modify feature data from VCF |
| Refs | Genotype frequency in references |
| scoreInvHap | scoreInvHap: package to get inversion status of predefined... |
| scoreInvHapRes-class | scoreInvHapRes instances |
| SNPsR2 | R2 between the SNPs and the inversion status |
