data/colon.R

In isglobal-brge/survrec: Survival analysis for recurrent event data

"colon" <-
structure(list(hc = c(5634, 5634, 5634, 10767, 10767, 15843, 
15843, 19655, 19655, 19655, 19655, 19655, 25109, 25109, 34713, 
34713, 34713, 34713, 34975, 34975, 34975, 34975, 35290, 41330, 
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939, 327, 0, 70, 16, 0, 240, 80, 167, 585, 1209, 1096, 1274, 
521, 75, 0, 1247, 1675, 1147, 1782, 468, 850, 1345, 656, 373, 
488, 107, 299, 765, 35, 1157, 0, 11, 1760, 276, 16, 400, 1427, 
0, 1509, 420, 766, 56, 60, 1361, 1642, 1835, 47, 1040, 238, 1744, 
29, 78, 5, 4, 27, 961, 1276, 0, 228, 1232, 570, 9, 3, 0, 58, 
1116, 334, 8, 92, 426, 6, 754, 7, 434, 0, 462, 150, 16, 0, 1495, 
396, 140, 1338, 1631, 1466, 96, 143, 236, 1516, 1078, 351, 30, 
230, 7, 68, 264, 648, 127, 360, 0, 181, 1339, 403, 1522, 1188, 
0, 236, 510, 0, 40, 285, 1073, 19, 12, 23, 0, 1323, 1309, 67, 
26, 216, 0, 78, 983, 538, 3, 12, 41, 1315, 1156, 1798, 94, 141, 
350, 113, 0, 320, 19, 0, 819, 16, 293, 1187, 29, 481, 0, 11, 
184, 0, 398, 765, 126, 5, 3, 3, 0, 343, 0, 1122, 2060, 130, 148, 
51, 2, 1123, 1268, 1161, 64, 104, 1085, 769, 1022, 520, 1458, 
15, 808, 293, 0, 247, 158, 202, 245, 545, 461, 146, 5, 336, 1948, 
1803, 662, 1139, 54, 9, 208, 2033, 1945, 388, 6, 12, 1685, 1104, 
593, 398, 232, 369, 19, 1451, 83, 513, 1292, 1969, 45, 842, 1737, 
995, 31, 0, 104, 1643, 1829, 1909, 1844, 1795, 1853, 206, 371, 
287, 139, 19, 9, 242, 76, 108, 132, 0, 123, 2, 0, 1603, 524, 
0, 260, 520, 3, 3, 2, 3, 5, 7, 3, 3, 1, 2, 2, 2, 2, 1, 1, 0, 
230, 1452, 16, 177, 38, 668, 165, 0, 4, 4, 768, 1330, 3, 163, 
217, 7, 0, 1815, 49, 76, 1517, 654, 1, 1897, 1676, 1348, 1321, 
16, 1365, 1315, 280, 720, 1652, 24, 1631, 1764, 54, 1456, 1736, 
0, 1739, 755, 474, 1, 107, 3, 0, 896, 665, 1087, 352, 589, 631, 
0, 342, 20, 0, 398, 597, 655, 21, 19, 0, 199, 1424, 42, 1081, 
276, 526, 43, 79, 141, 0, 358, 58, 1395, 1655, 1006, 1328, 261, 
283, 718, 732, 56, 67, 8, 27, 207, 134, 2, 21, 0, 6, 7, 5, 43, 
20, 10, 0, 930, 121, 1508, 103, 45, 0, 12, 436, 1299, 79, 474, 
218, 190, 69, 241, 1487, 40, 167, 184, 436, 0, 1546, 1267, 1589, 
216, 0, 820, 46, 1128, 403, 2, 1295, 98, 368, 93, 227, 215, 228, 
1567, 542, 63, 147, 0, 1638, 1197, 1487, 1262, 1121, 1145, 1054, 
227, 1171, 3, 0, 81, 42, 364, 1057, 0, 742, 727, 50, 11, 11, 
11, 11, 11, 11, 15, 11, 15, 11, 12, 12, 12, 11, 12, 12, 11, 11, 
12, 12, 227, 0, 125, 8, 122, 161, 1492, 1236, 0, 199, 113, 50, 
15, 1320, 135, 0, 1484, 1205, 69, 335, 188, 1210, 1053, 858, 
224, 450, 33, 1068, 592, 43, 705, 47, 0, 1068, 79, 0, 344, 1087, 
318, 1162, 221, 1090, 371, 267, 416, 620, 61, 3, 70, 3, 46, 0, 
1040, 756, 1280, 78, 686, 29, 212, 980, 1115, 1096, 21, 27, 338, 
0, 1103, 1206, 161, 1075, 453, 32, 38, 54, 99, 542, 73, 163, 
1288, 0, 17, 8, 29, 12, 226, 68, 39, 28, 24, 1028, 57, 229, 12, 
67, 14, 297, 203, 247, 13, 5, 13, 18, 11, 162, 928, 22, 107, 
2, 189, 272, 297, 731, 328, 575), event = c(1, 1, 0, 1, 0, 1, 
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1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 2, 2, 2, 2, 1, 2, 
2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 
2, 2, 2, 1, 1, 1, 1, 1, 2, 2, 2, 2, 1, 2, 2, 1, 1, 2, 2, 2, 2, 
2, 2, 2, 2, 1, 1, 1, 2, 2, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 
2, 2, 2, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 
1, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 2, 1, 1, 1, 2, 2, 2, 2, 2, 2, 
2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 2, 1, 1, 2, 2, 1, 1, 
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 
1, 1, 2, 2, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 1, 2, 2, 2, 2, 1, 1, 
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 
2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 
1, 1, 1, 1, 1, 1, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
1, 1, 1, 2, 2, 2, 2, 1, 1, 2, 1, 1, 1, 2, 2, 2, 2, 1, 1, 1, 1, 
1, 1, 1, 1, 2, 2, 1, 1, 1, 1, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 
2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 2, 2, 2, 2, 2, 1, 1, 1, 
1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 2, 2, 2, 2, 2, 
1, 2, 2, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 2, 1, 2, 2, 2, 2, 1, 
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 2, 1, 1, 2, 2, 2, 
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
1, 2, 2, 1, 1, 1, 1, 2, 2, 1, 1, 2, 2, 2, 1, 2, 2, 2, 1, 1, 1, 
1, 1, 1, 1, 1, 2, 1, 2, 2, 2, 1, 2, 1, 1, 1, 2, 2, 2, 2, 2, 2, 
1, 2, 1, 2, 2, 2, 2, 2, 1, 1, 2, 2, 2, 2, 1, 2, 1, 1, 1, 1, 1, 
1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 2, 2, 1, 1, 
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 2), 
    dukes = c(3, 3, 3, 2, 2, 2, 2, 1, 1, 1, 1, 1, 2, 2, 1, 1, 
    1, 1, 1, 1, 1, 1, 2, 2, 2, 1, 1, 1, 1, 1, 2, 2, 1, 3, 3, 
    3, 1, 1, 2, 1, 3, 3, 3, 1, 1, 2, 3, 3, 2, 2, 2, 3, 1, 2, 
    3, 3, 1, 1, 1, 3, 3, 3, 1, 1, 1, 1, 3, 3, 3, 1, 2, 2, 2, 
    2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 1, 1, 1, 2, 2, 2, 3, 3, 
    2, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 2, 2, 2, 
    1, 1, 1, 1, 2, 1, 1, 2, 2, 1, 1, 3, 1, 1, 1, 1, 1, 2, 2, 
    2, 1, 1, 3, 3, 3, 3, 1, 2, 2, 3, 3, 3, 1, 1, 1, 1, 1, 1, 
    1, 1, 3, 2, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 3, 3, 3, 3, 1, 1, 1, 2, 2, 2, 2, 2, 3, 3, 
    3, 2, 3, 3, 3, 1, 1, 1, 1, 1, 2, 1, 1, 3, 1, 1, 3, 3, 1, 
    1, 1, 2, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 2, 2, 2, 3, 3, 3, 
    1, 1, 2, 2, 1, 2, 3, 3, 3, 3, 3, 1, 2, 2, 2, 1, 1, 2, 2, 
    2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 
    2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 3, 3, 3, 3, 3, 1, 1, 1, 1, 
    1, 2, 2, 1, 1, 2, 2, 2, 3, 3, 3, 1, 2, 2, 2, 2, 1, 2, 1, 
    1, 1, 1, 1, 2, 1, 3, 1, 1, 1, 1, 2, 2, 2, 2, 1, 1, 1, 2, 
    1, 2, 2, 2, 2, 2, 1, 1, 1, 2, 2, 2, 2, 1, 3, 3, 2, 1, 2, 
    2, 2, 2, 2, 2, 2, 2, 1, 1, 2, 2, 2, 2, 2, 2, 2, 3, 3, 1, 
    1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 3, 3, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 1, 1, 1, 1, 1, 1, 2, 2, 
    2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 3, 1, 1, 1, 1, 
    1, 1, 1, 2, 3, 3, 3, 3, 3, 2, 2, 2, 1, 1, 1, 2, 1, 3, 3, 
    3, 3, 3, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 
    2, 1, 2, 2, 2, 2, 1, 1, 2, 3, 2, 2, 2, 3, 3, 2, 2, 2, 1, 
    1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 
    2, 2, 2, 2, 3, 1, 1, 1, 3, 2, 1, 1, 3, 3, 2, 2, 2, 1, 2, 
    1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 2, 3, 3, 
    3, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 
    2, 3, 3, 3, 3, 3, 3, 1, 1, 1, 2, 1, 1, 1, 1, 1, 2, 2, 2, 
    2, 2, 2, 2, 1, 2, 1, 1, 1, 1, 2, 2, 1, 1, 1, 2, 3, 1, 1, 
    1, 2, 3, 3, 3, 3, 3, 3, 1, 1, 1, 3, 3, 3, 3, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 2, 2, 3, 1, 1, 2, 3, 3, 3, 3, 3, 3, 2, 2, 
    2, 1, 1, 1, 1, 1, 3, 3, 3, 3, 3, 3, 3, 3, 3, 1, 1, 1, 1, 
    1, 1, 1, 1, 2, 2, 3, 3, 3, 2, 2, 2, 2, 2, 3, 3, 3, 3, 1, 
    2, 2, 2, 2, 2, 1, 1, 1, 2, 2, 1, 3, 1, 1, 2, 2, 2, 2, 2, 
    2, 2, 2, 2, 1, 2, 2, 2, 1, 1, 1, 2, 1, 1, 2, 2, 2, 2, 2, 
    2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 
    3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 2, 2, 2, 2, 2, 2, 2, 3, 
    3, 3, 3, 1, 2, 2, 2, 1, 2, 3, 3, 1, 1, 1, 3, 2, 2, 1, 1, 
    1, 1, 1, 1, 2, 2, 2, 2, 2, 3, 2, 3, 2, 3, 1, 1, 1, 3, 3, 
    3, 3, 3, 3, 2, 1, 2, 1, 1, 3, 3, 1, 1, 1, 1, 1, 1, 1, 2, 
    1, 3, 3, 2, 2, 2, 2, 2, 2, 1, 1, 2, 2, 3, 3, 3, 3, 3, 3, 
    2, 2, 2, 2, 1, 1, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 1, 
    2, 2, 2, 2, 2, 2, 1, 1, 1), distance = c(1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 
    2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 
    1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 2, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 1, 1, 1, 
    1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 
    1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 2, 2, 
    2, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 1, 1, 1, 2, 1, 1, 1, 1, 
    2, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 2, 2, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 
    1, 1, 2, 1, 1, 2, 2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 
    2, 1, 1, 2, 2, 1, 1, 2, 2, 2, 2, 2, 2, 1, 2, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, NA, 
    2, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 
    1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    2, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 1, 1, 
    1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 1, 1, 1)), .Names = c("hc", 
"time", "event", "chemoter", "dukes", "distance"), row.names = c("1", "2", "3", "4", "5", "6", "7", "8", "9", 
"10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", 
"21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", 
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"125", "126", "127", "128", "129", "130", "131", "132", "133", 
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