PlotChIPAnnos: Plot ChIP annotation breakdowns

In j-andrews7/OneLinerOmics: One-liner RNA-seq and ChIP-seq Analyses

Description

PlotChIPAnnos generates various plots for all annotated peaksets (as generated by annotatePeak) found in peak.anno.

Usage

PlotChIPAnnos(
  peak.anno,
  outpath,
  consensus = TRUE,
  comp = NULL,
  fc = NULL,
  fdr = NULL
)

Arguments

peak.anno	A named list of csAnno objects with annotated peaks as returned by annotatePeak. If consensus = TRUE, only one is expected, otherwise there should be three (All DBRs, group1 up, group2 up).
outpath	Path to directory to be used for output.
consensus	Boolean indicating if consensus peaks are provided.
comp	Name of comparison, for file naming.
fc	Fold change threshold, for file naming.
fdr	FDR threshold, for file naming.

Author(s)

Jared Andrews

j-andrews7/OneLinerOmics documentation built on Sept. 9, 2021, 11 a.m.