PlotRNAVolcanoes: Create volcano plots from a list of DESeq2 Results objects

Description Usage Arguments Author(s)

View source: R/RNAseqViz.R

Description

Create volcano plots from a list of DESeq2 Results objects

Usage

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PlotRNAVolcanoes(
  res.list,
  dds,
  outpath,
  padj.thresh,
  fc.thresh,
  n.labels = 10,
  use.labels = TRUE
)

Arguments

res.list

Named List containing DESeqResults objects for all comparisons generated by ProcessDEGs.

dds

A DESeqDataSet object as returned by DESeq, RunDESeq2, or ProcessDEGs.

outpath

Path to directory to be used for output.

padj.thresh

Number indicating the adjusted p-value cutoff to be used for determining "significant" differential expression.

fc.thresh

Number indicating the log2 fold-change cutoff to be used for determining "significant" differential expression.

n.labels

Number of genes to label on the volcano plot, ranked by adjusted p-value.

use.labels

Boolean indicating whether labels should be added to plot.

Author(s)

Jared Andrews


j-andrews7/OneLinerOmics documentation built on Sept. 9, 2021, 11 a.m.