PlotRNAHeatmaps: Generate per comparison DEG heatmaps for a list of DESeq2...

In j-andrews7/OneLinerOmics: One-liner RNA-seq and ChIP-seq Analyses

Description

Generate per comparison DEG heatmaps for a list of DESeq2 results

Usage

PlotRNAHeatmaps(
  res.list,
  rld,
  vsd,
  level,
  outpath,
  padj.thresh,
  fc.thresh,
  plot.annos
)

Arguments

res.list	Named List containing DESeqResults objects for all comparisons generated by ProcessDEGs.
rld	A RangedSummarizedExperiment object of rlog transformed counts as returned by RunDESeq2.
vsd	A RangedSummarizedExperiment object of vst transformed counts as returned by RunDESeq2.
level	String defining variable of interest.
outpath	Path to directory to be used for output.
padj.thresh	Number indicating the adjusted p-value cutoff to be used for determining "significant" differential expression.
fc.thresh	Number indicating the log2 fold-change cutoff to be used for determining "significant" differential expression.
plot.annos	String or character vector defining the column(s) to use to annotate figures.

Author(s)

Jared Andrews

j-andrews7/OneLinerOmics documentation built on Sept. 9, 2021, 11 a.m.