NEWS.md

In jaime11/Transcription-Factor-Footprinting: ATAC-seq Quality Control

CHANGES IN VERSION 1.1.5

• update the vignette.

CHANGES IN VERSION 1.1.4

• change author list.

CHANGES IN VERSION 1.1.3

• change output of factorFootprints.

CHANGES IN VERSION 1.1.2

• add cumulativePercentage in vignette

CHANGES IN VERSION 1.1.1

• add new author.

CHANGES IN VERSION 0.99.8

• reduce the memory cost.

CHANGES IN VERSION 0.99.7

• update phastCons to GScores.

CHANGES IN VERSION 0.99.6

• update documentation
• change package Name from ATACqc to ATACseqQC
• remove unused dependence
• change class checking from class to is

CHANGES IN VERSION 0.99.5

• add bindingSites argument for factorFootprints

CHANGES IN VERSION 0.99.4

• change shiftBam to shiftGAlignmentsList
• drop seqlevs arguments from functions

CHANGES IN VERSION 0.99.3

• try to avoid error in windows that splitBam ask too much memory

CHANGES IN VERSION 0.99.2

• change function name from splitBamByCut to splitGAlignmentsByCut
• add function shiftBam and writeGAlignmentsList
• rewrite splitBam function by just call shiftBam, splitGAlignmentsByCut and writeGAlignmentsList.

CHANGES IN VERSION 0.99.1

• fix the bug "object inverted is not exported by 'namespace:Biostrings'"

CHANGES IN VERSION 0.99.0

• Submit to Bioconductor.

CHANGES IN VERSION 0.1.0

• Create the package.

jaime11/Transcription-Factor-Footprinting documentation built on May 31, 2019, 8:48 p.m.