API for jakeyeung/SleepDepModelSelection
| Global functions | |
|---|---|
| AddBICToDat | Source code |
| AddDarkPhases | Source code |
| AddMaxTime | Source code |
| AddSDPeriod | Source code |
| AddSampleToMeta | Source code |
| AddTimeToMeta | Source code |
| AddToEnviron | Source code |
| AmpFunc | Source code |
| AmpPhaseOrCosSin | Source code |
| AmpPhaseToCosSine | Source code |
| AnnotatePseudogenes | Source code |
| AnnotateTranscriptLength | Source code |
| AppendGeneID | Source code |
| AppendTauMrna | Source code |
| Attribute2Gene | Source code |
| BindParameters | Source code |
| CalcDist | Source code |
| CapitalizeFirstLetter | Source code |
| ChangeModelNames | Source code |
| CollapseWake | Source code |
| CompareTwoTimes | Source code |
| ConvertMdlNames | Source code |
| CosSineToAmpPhase | Source code |
| DatLongToEnvironment | Source code |
| DatToLong | Source code |
| DegFree | Source code |
| DiffPhase | Source code |
| DistFromClstr | Source code |
| DoPca | Source code |
| DoTtest | Source code Source code |
| DoubleRepsOverTime | Source code |
| DownSample | Source code |
| DownsampleEeg | Source code |
| DuplicateTime | Source code |
| DuplicateVector | Source code |
| EegToWake | Source code |
| EnsemblGene2Gene | Source code |
| ExtractChromoStartEndGene | Source code |
| FilterDatMaxPhase | Source code |
| FitFlat | Source code |
| FitGeneric | Source code |
| FitProcessS | Source code |
| FitRhythmic | Source code |
| FitRhythmic.FreeAmp | Source code |
| FitWeightedSCircadian | Source code |
| FitWeightedSFreeAmp | Source code |
| FixCname | Source code |
| FixLogLBic | Source code |
| FixLogLBic.3models | Source code |
| Gene2Ensembl | Source code |
| Gene2StartEnd | Source code |
| Gene2Strand | Source code |
| GetBIC | Source code |
| GetBIC.logL | Source code |
| GetBICEle | Source code |
| GetChromoStartEnd | Source code |
| GetClockGenes | Source code |
| GetCols | Source code |
| GetCountsMatrix | Source code |
| GetExprsDist | Source code |
| GetForm | Source code |
| GetGenesFromDb | Source code |
| GetGenesFromMotifs | Source code |
| GetGenesKeep | Source code |
| GetLims.S | Source code |
| GetLims.S.LowPass | Source code |
| GetLims.circ | Source code |
| GetMotifFromGene | Source code |
| GetParams.ampfree | Source code |
| GetParams.circadian | Source code |
| GetParams.flat | Source code |
| GetParams.lowpass | Source code |
| GetParams.mixed | Source code |
| GetParams.mixedaf | Source code |
| GetParams.sleep | Source code |
| GetPchs | Source code |
| GetResiduals | Source code |
| GetSubsampledEeg | Source code |
| GetSwitchHash | Source code |
| GetTFs | Source code |
| GetTitle.ampfree | Source code |
| GetTitle.circadian | Source code |
| GetTitle.flat | Source code |
| GetTitle.lowpass | Source code |
| GetTitle.mixed | Source code |
| GetTitle.mixedaf | Source code |
| GetTitle.sleep | Source code |
| GetTswitch | Source code |
| GetWakeCollapsed | Source code |
| GetYMajorSource | Source code |
| LoadClstrConstants | Source code |
| LoadClusteringObjs | Source code |
| LoadClusteringObjs.runKmeans | Source code |
| LoadDatabase | Source code |
| LoadHtseq | Source code |
| LoadInits | Source code |
| LoadMaraOutput | Source code |
| LoadPCAMat | Source code |
| LoadPrimetimeObjs | Source code |
| LoadProcessData | Source code |
| LoadSleuthOutput | Source code |
| LoadSleuthOutput.cleaner | Source code |
| LoadTwoFitsAndMerge | Source code |
| LongSampToRep | Source code |
| LongSampToTime | Source code |
| LowPass | Source code |
| Make48Hours | Source code |
| MakeCoords | Source code |
| MakeDatShift | Source code |
| MakeDatShift.nogene | Source code |
| MakeNegHours | Source code |
| MatToLong | Source code |
| MaxDiffPhaseVector | Source code |
| MdlHash | Source code |
| MdlKeys | Source code |
| MdlVals | Source code |
| MergeLists | Source code |
| MergeLowPassFits | Source code |
| MergeRep | Source code |
| MergeTechnicalReplicates | Source code |
| Mode | Source code |
| NDecimals | Source code |
| OrderDecreasing | Source code |
| ParseFormGetParams | Source code |
| PenalizeLoss | Source code |
| PenaltyFactor | Source code |
| PlotAmpPhase | Source code |
| PlotBestFit | Source code |
| PlotByDistance | Source code |
| PlotEeg | Source code |
| PlotExprsVsWakefulness | Source code |
| PlotFit | Source code |
| PlotGeneAcrossTime | Source code |
| PlotGeneAcrossTimeLong | Source code |
| PlotGeneAcrossTimeSamps | Source code |
| PlotGeneList | Source code |
| PlotMara | Source code |
| PlotMara.withEEG | Source code |
| PlotPcs | Source code |
| PlotPoints | Source code |
| PlotPoints.atacseq | Source code |
| PlotPoints.withEEG | Source code |
| PlotPolarHistogram | Source code |
| PlotResiduals | Source code |
| PlotSCGene | Source code |
| PlotTimeCourse | Source code |
| PredictAmpFree | Source code |
| PredictAnyProcessS | Source code |
| PredictCircadian | Source code |
| PredictExprs | Source code |
| PredictFlat | Source code |
| PredictMix | Source code |
| PredictMixedAF | Source code |
| PredictSleep | Source code |
| PvalFromTDist | Source code |
| ReadMetaDataRound2 | Source code |
| ReadMetaMatchSampOrder | Source code |
| ReadProcessMetadata | Source code |
| RearrangeCluster | Source code |
| RemoveLists | Source code |
| RemoveMtGenes | Source code |
| RenameGene | Source code |
| RenamePeak | Source code |
| RenameTime | Source code |
| Rhythmic.FreeAmp | Source code |
| S.process.collapsed | Source code |
| SampIDToTime | Source code |
| SampToRep | Source code |
| SampToTime | Source code |
| SampToTime.merged | Source code |
| SampToTrt.merged | Source code |
| SampToTrtmnt | Source code |
| ShiftCollapseEeg | Source code |
| ShiftEeg | Source code |
| ShiftTime | Source code |
| SimpleCap | Source code |
| SleepFromSamp | Source code |
| SmoothWakefulness5Minutes | Source code |
| SpreadRepsOverTime | Source code |
| Sprocess | Source code |
| StandardizeColnames | Source code |
| SumOverSamples | Source code |
| SummarizeConvergenceByModel | Source code |
| SummarizeParameters | Source code |
| TakeAvgWakeStatus | Source code |
| TimeFromSamp | Source code |
| TimeToDay | Source code |
| TimeToZT | Source code |
| Transcript2Gene | Source code |
| Transcript2Strand | Source code |
| TtestDat | Source code |
| TwoSampVar | Source code |
| WeightedLm | Source code |
| WeightedSCircadian | Source code |
| WeightedSFreeAmp | Source code |
| WrangleDatForModelSelection | Source code |
| collapse.integers | Source code |
| fmt_dcimals | Source code Source code |
| geneRanges | Source code Source code |
| genomicRangesToBed | Source code |
| hello | Man page |
| insert_str | Source code |
| interleave | Source code |
| logL.Rhythmic.FreeAmp | Source code |
| logL.Scollapsed | Source code |
| logL.WeightedSCircadian | Source code |
| logL.WeightedSFreeAmp | Source code |
| movingAverage | Source code |
| multiplot | Source code |
| splitColumnByOverlap | Source code Source code |
| split_str_by_index | Source code |
