collapse.integers <- function(x){
# Collapse so there are no gaps
# c(1,3,5,7) -> c(1,2,3,4)
# c(1,3,3,5) -> c(1,2,2,3)
# c(9,8,5,5,3,2,1) -> c(6,5,4,4,3,2,1)
x.collapsed <- rep(NA, length(x))
indxs <- sort.int(x, index.return=TRUE, method="shell")$ix
j <- 0
for (i in seq(length(indxs))){
indx <- indxs[i]
x.now <- x[indx]
if (i > 1){
x.prev <- x[indxs[i - 1]]
} else {
x.prev <- Inf
}
# check if previous index is same as current index
if (x.now == x.prev){
x.collapsed[indx] <- j
} else {
j <- j + 1
x.collapsed[indx] <- j
}
}
return(x.collapsed)
}
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