Files in jakeyeung/SleepDepModelSelection
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/PlotGeneTimeCourse.R
R/PlotMotifTimeCourse.R
R/data.R
R/functions/AtacSeqFunctions.R
R/functions/BiomartFunctionsSleep.R
R/functions/ClusteringFunctions.R
R/functions/DatabaseFunctions.R
R/functions/DoTtest.R
R/functions/EegFunctions.R
R/functions/EnvironmentsFunctions.R
R/functions/FitFunctions.R
R/functions/FitFunctions_Downstream.R
R/functions/GetClockGenes.R
R/functions/GetSwitchHash.R
R/functions/GetTFs.R
R/functions/HandleRawDataFunctions.R
R/functions/HashFunctions.R
R/functions/IntegerFunctions.R
R/functions/LoadData.R
R/functions/MaraDownstream.R
R/functions/MdlNames.R
R/functions/MergingAssigningSamples.R
R/functions/ModelSelectionFunctions.R
R/functions/PhaseFunctions.R
R/functions/PlotFun_Maxime.R
R/functions/PlotFunctions.R
R/functions/PlotFunctions.auxiliary.R
R/functions/RnaSeqFunctions.R
R/functions/RoundTwoPCAScripts.R
R/functions/SleuthFunctions.R
R/functions/SmoothingFunctions.R
R/functions/StringFunctions.R
R/functions/SummarizeModels.R
R/functions/TimeShiftFunctions.R
R/functions/WellingtonFunctions.R
R/functions/plot_genelists.R
README.md
data/dat.long.cleaned.techmerged_zt24assigned.RData
data/dat.long.kallisto.combat.mean_only.FALSE.exprs_cutoff.2.5.Robj
data/fits_Rcpp_bugfix.maxiter.2000.LogLBicCorrected.model.sleep_mix_mixedaf_ampfreestep.lambda.1000.dolinear.FALSE.minhl.0.33.RData
data/fits_Rcpp_sleuthfilt.maxiter.3000.model.LogLBicCorrected.model.sleep_mix_mixedaf.lambda.1000.dolinear.FALSE.minhl.0.33.RData
data/kmeans_objs.Robj
data/motifs_and_TFs.list
data/sleep_deprivation_gene_exprs_all/Activities
data/sleep_deprivation_gene_exprs_all/Colnames
data/sleep_deprivation_gene_exprs_all/FOV
data/sleep_deprivation_gene_exprs_all/Lambda
data/sleep_deprivation_gene_exprs_all/StandardError
data/sleep_deprivation_gene_exprs_all/Zscores
data/sleep_deprivation_gene_exprs_all/r.Robj
data/wake.df.method.mode.RData
man/hello.Rd
