Files in jakeyeung/TissueCiradianAnalysis

Analysis of oscillatory RNASeq data

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/ActivitiesFunctions.R R/ActivitiesMergedFunctions.R R/AlternativeFirstExonsFunctions.R R/AnalyzeGeneEnrichment.R R/AppendListFunctions.R R/BiomartFunctions.R R/ClusterTFsFunctions.R R/ColorFunctions.R R/ConvertLongToWide.R R/ConvertRNASeqTissueNamesToArray.R R/CosSineFunctions.R R/DataHandlingFunctions.R R/DhsFunctions.R R/DifferentialSitecountsFunctions.R R/EnvironmentsFunctions.R R/Filter33Motifs.R R/FilterBedFile.R R/FirstColToRowname.R R/FisherTestSitecounts.R R/FitMotifAmp.R R/FitRhythmic.R R/FitRhythmicAcrossPeriods.R R/FitSaturationCurveFindProblemGenes.R R/FixGeneName.R R/FourierFunctions.R R/GeneTissueCalculations.R R/GetActSvd.R R/GetClockGenes.R R/GetTFs.R R/GetTissueNames.R R/GetTissueSpecificMatrix.R R/GetTissueTimes.R R/GetTopMotifs.R R/GetTopNValues.R R/GraphFunctions.R R/GrepRikGenes.R R/HalfLifeFunctions.R R/HandleMotifNames.R R/HandleTissueNames.R R/HardcodedConstants.R R/HashFunctions.R R/LdaFunctions.R R/ListFunctions.R R/LiverKidneyFunctions.R R/LoadActivitiesLong.R R/LoadActivitiesPlotSvd.R R/LoadAndHandleData.R R/LoadArray.R R/LoadArrayRnaSeq.R R/LoadKallisto.R R/LoadKallistoGene.R R/LoadLong.R R/LoadPol2Activities.R R/LoadSitecounts.R R/LongToMat.R R/MakeCluster.R R/MemoryManagement.R R/MergeAndProject.R R/MergeToLong.R R/MixtureModelFunctions.R R/ModelStrToModel.R R/NcondsAnalysisFunctions.R R/NcondsFunctions.R R/OrderPhaseMatrix.R R/OuterComplex.R R/PCAFunctions.R R/PcaPlotFunctions.R R/PhaseColorFunctions.R R/PlotActivitiesFunctions.R R/PlotFunctions.R R/PlotGeneAcrossTissues.R R/PlotGeneTpm.R R/PlotSitecounts.R R/PlotUCSC.R R/ProjectActivities.R R/ProjectToFrequency.R R/ProteomicsFunctions.R R/Queue.R R/ReadListToVector.R R/RegressionFunctions.R

R/RemoveCommasBraces.R

R/RemoveExtension.R R/RemoveP2Name.R R/RemoveProblemGenes.R R/ReplaceNegs.R R/RunElasticNet.R R/SampleNameHandler.R R/Segment.R R/ShannonEntropy.R R/SitecountsFunctions.R R/SortByTissue.R R/SvdFunctions.R R/TissueSpecificRhythmicsFunctions.R R/VarianceFunctions.R R/WriteGeneListMat.R R/WriteListToFile.R R/data.R R/data_datlong_WTKO_for_nconds_fits.R R/hosvd.R README.R README.Rmd

README.html

README.md

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data/dat_long_WTKO.RData

man/hello.Rd tutorial_fit_conditions_to_data.R tutorial_fit_conditions_to_data.md

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jakeyeung/TissueCiradianAnalysis documentation built on Aug. 7, 2020, 7:58 p.m.