Man pages for jakubmie/MACC
MNase accesibility (MACC) scores.
| count.gc.cont | A function to count GC content in the selected bins. |
| count.tags.in.bins | A function to compute number of tags in the selected bins. |
| generate.profiles | A function to read positions of aligned tags. |
| getMACCscores | A wrapper function to compute MNase accessibility (MACC)... |
| macc | A function to compute MNase accessibility (MACC) scores. |
| plotFragmentLengthDensities | A function to plot distributions of fragment lengths. |
| plotGCvsMACC | A function to plot scatter plot showing association between... |
| profile2bedGraph | A wrapper function to compute MNase accessibility (MACC)... |
| read.bam.file | A function to count GC content in the selected bins. |
| read.genomic.data | A function to read genomic data. |
| read.tags | A function to read positions of aligned tags. |
| rta | A function to remove tag anomalies. |
| tag.centers | A function to compute positions of sequenced tags. |
| tag.lengths | A function to compute lengths of sequenced tags. |
