count.tags.in.bins: A function to compute number of tags in the selected bins.

In jakubmie/MACC: MNase accesibility (MACC) scores.

Description

A function to compute number of tags in the selected bins.

Usage

count.tags.in.bins(profs = NULL, chr.stat = NULL, chrn = NULL,
  mc.cores = 2, bin = NULL, scale.genome.to.100Mb = TRUE,
  normalize.perBinSize = TRUE)

Arguments

profs	a list of signle positions representing used reads.
chr.stat	a data.frame with sizes of analyzed chromosmes.
chrn	a vector of chromosome names or NULL for all chromosomes.
mc.cores	a number of cores for parallel computing.
bin	a size of a bin.
scale.genome.to.100Mb	logical. Should the values be normalized to genome size?
normalize.perBinSize	logical. Should the values be normalized to been size?

Examples

count.tags.in.bins()

jakubmie/MACC documentation built on May 18, 2019, 11:17 a.m.