read.tags: A function to read positions of aligned tags.
In jakubmie/MACC: MNase accesibility (MACC) scores.
Description
Usage
Arguments
Examples
Description
A function to read positions of aligned tags.
Usage
1
2
Arguments
setlist
a list of vectors with names of files contains positions of aligned reads. Each vector should correspond to one sample, and order of files should correspond to ascending order of MNase concentrations used in the experiment.
path2files
a path to files to be read.
chrn
a vector of chromosome names or NULL for all chromosomes.
mc.cores
a number of cores for parallel computing.
filter.anomalies
logical. Should tags associated with anomalously high read counts be removed?
Examples
1
jakubmie/MACC documentation built on May 18, 2019, 11:17 a.m.
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Description Usage Arguments Examples
Description
A function to read positions of aligned tags.
Usage
1 2 |
Arguments
setlist |
a list of vectors with names of files contains positions of aligned reads. Each vector should correspond to one sample, and order of files should correspond to ascending order of MNase concentrations used in the experiment. |
path2files |
a path to files to be read. |
chrn |
a vector of chromosome names or NULL for all chromosomes. |
mc.cores |
a number of cores for parallel computing. |
filter.anomalies |
logical. Should tags associated with anomalously high read counts be removed? |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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