epi_ode_size: Epidemic Final Size Calculation ODE
In jameshay218/episize: Epidemic Final Size Calculator
Description
Usage
Arguments
Value
See Also
Description
Calculates the final size of an epidemic given 2-dimensional population categorisation eg. age and immunity class using an SIR model
Usage
1
epi_ode_size(C1, R0, Tg, Ns, alphas)
Arguments
C1
the non-normalised contact matrix of contact frequencies between each age class
R0
the disease specific R0 (transmission rate). Note that another parameter will mediate the contact rate
Tg
number of days spent infectious (ie. 1/gamma)
Ns
the matrix of population sizes for each age/titre combination (non-normalised) (ie. rows = ages, cols = immunity classes)
alphas
a vector of values between 0 and 1 matching the number of immunity classes
Value
an NxM matrix of attack rates (ie. proportion of susceptibles becoming infected)
See Also
jameshay218/episize documentation built on May 18, 2019, 11:20 a.m.
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Description Usage Arguments Value See Also
Description
Calculates the final size of an epidemic given 2-dimensional population categorisation eg. age and immunity class using an SIR model
Usage
1 | epi_ode_size(C1, R0, Tg, Ns, alphas)
|
Arguments
C1 |
the non-normalised contact matrix of contact frequencies between each age class |
R0 |
the disease specific R0 (transmission rate). Note that another parameter will mediate the contact rate |
Tg |
number of days spent infectious (ie. 1/gamma) |
Ns |
the matrix of population sizes for each age/titre combination (non-normalised) (ie. rows = ages, cols = immunity classes) |
alphas |
a vector of values between 0 and 1 matching the number of immunity classes |
Value
an NxM matrix of attack rates (ie. proportion of susceptibles becoming infected)
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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