general_sir: General SIR ode
In jameshay218/episize: Epidemic Final Size Calculator
Description
Usage
Arguments
Value
Description
Generic SIR ode function (for use in deSolve), taking an arbritrary number of populations, ages and immunity classes
Usage
1
general_sir(t, y, pars, C, Nage, Ntiter)
Arguments
t
current time, as for ode function
pars
vector of R0, 1/gamma and alphas (vector of immunity conferred for each titre class)
C
the normalised contact matrix of contact frequencies between each age and titre classes
Nage
number of age classes
Ntiter
number of titre classes
vector
of compartment sizes eg. S11, I11, R11, S12, I12, R12 etc...
Value
a list of compartment size changes, as required by deSolve
jameshay218/episize documentation built on May 18, 2019, 11:20 a.m.
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Description Usage Arguments Value
Description
Generic SIR ode function (for use in deSolve), taking an arbritrary number of populations, ages and immunity classes
Usage
1 | general_sir(t, y, pars, C, Nage, Ntiter)
|
Arguments
t |
current time, as for ode function |
pars |
vector of R0, 1/gamma and alphas (vector of immunity conferred for each titre class) |
C |
the normalised contact matrix of contact frequencies between each age and titre classes |
Nage |
number of age classes |
Ntiter |
number of titre classes |
vector |
of compartment sizes eg. S11, I11, R11, S12, I12, R12 etc... |
Value
a list of compartment size changes, as required by deSolve
R Package Documentation
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