Description Usage Arguments Value
Generic SIR ode function (for use in deSolve), taking an arbritrary number of populations, ages and immunity classes
1 | general_sir(t, y, pars, C, Nage, Ntiter)
|
t |
current time, as for ode function |
pars |
vector of R0, 1/gamma and alphas (vector of immunity conferred for each titre class) |
C |
the normalised contact matrix of contact frequencies between each age and titre classes |
Nage |
number of age classes |
Ntiter |
number of titre classes |
vector |
of compartment sizes eg. S11, I11, R11, S12, I12, R12 etc... |
a list of compartment size changes, as required by deSolve
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