Files in jameshay218/mcmcJH
Generic random walk MCMC algorithm for parameter inference
DESCRIPTION
DESCRIPTION~
NAMESPACE
R/.RData
R/.Rhistory
R/Grp 1 (H3N2)_params.csv
R/checking_functions.R
R/checking_functions.R~
R/cost_functions.R
R/ferret_panama_split.csv
R/helper_functions.R
R/infection_times.csv
R/main.R
R/main2.R
R/maths_functions.R
R/mcmc.cpp~
R/mcmc.hpp~
R/mcmc_functions.R
R/mcmc_functions.R~
R/mcmc_parameters.csv
R/mcmc_wrapper_2.R
R/mcmc_wrapper_script.R
R/mcmc_wrapper_script.R~
R/model_functions.R
R/model_functions.R~
R/optifix.R
R/optifix.R~
R/param_table.csv
R/plotting_functions.R
R/plotting_functions.R~
R/poisson_error_functions.R
R/priors.R
R/priors.R~
R/rcpp_functions.cpp
R/simulation.R
R/temp.cpp
R/temp.cpp~
R/test.R~
R/tmp.cpp
R/tmp2.R
ferret_b_data.csv
log_ferret_b.csv
man/.Rhistory
man/MCMC_fit_1.1.Rd
man/MCMC_fit_1.2.Rd
man/MCMC_fit_single.Rd
man/MCMC_main.Rd
man/condense.data.Rd
man/condense.data.simple.Rd
man/create_polygons.Rd
man/fromUnitScale1.Rd
man/generate_prediction_intervals_1.1.Rd
man/generate_prediction_intervals_1.2.Rd
man/generate_prior_data.Rd
man/likelihood_norm.Rd
man/likelihood_observation.Rd
man/likelihood_poisson.Rd
man/load_param_table.Rd
man/logistic.Rd
man/logit.Rd
man/mcmc_all_plots_multi.Rd
man/mcmc_all_plots_single.Rd
man/mcmc_density_multi.Rd
man/mcmc_density_single.Rd
man/mcmc_diagnostics.Rd
man/mcmc_iter_multi.Rd
man/mcmc_iter_single.Rd
man/mcmc_param_check.Rd
man/optifix.Rd
man/pad_lists.Rd
man/param_check.Rd
man/plot_model_fits.Rd
man/posterior1.Rd
man/predict.titre.OLD.Rd
man/predict.titre.fast.Rd
man/predict.titre.fast.bounded.Rd
man/predict_titre_universal_m.Rd
man/predict_titre_universal_m_2.Rd
man/prior.Rd
man/prior_wrapper.Rd
man/proposalfunction1.Rd
man/rand.params.Rd
man/remove_zero_data.Rd
man/restrain_bounds.Rd
man/run_metropolis_MCMC.Rd
man/scaletuning1.Rd
man/titre_model.Rd
man/toUnitScale1.Rd
man/transform_logistic.Rd
man/transform_logit.Rd
man/transform_params_logistic.Rd
man/transform_params_logisticOLD.Rd
man/transform_params_logit.Rd
man/transform_params_logitOLD.Rd
mcmcJH.Rproj
