mcmc_diagnostics: MCMC diagnostic tests

Description Usage Arguments Value

View source: R/mcmc_functions.R

Description

Runs some basic MCMC diagnostics on the given chain and saves a few plots. The diagnostics are:

Usage

1
mcmc_diagnostics(mcmc_chains, filename, param_table, VERBOSE = FALSE)

Arguments

mcmc_chains

the entire MCMC chain to be tested

filename

the full file path at which to save the diagnostics. _gelman.pdf will be appended, for example

param_table

the parameter table as loaded by load_param_table

VERBOSE

boolean flag for additional output. Defaulst to FALSE

Value

returns any error messages raised during the tests


jameshay218/mcmcJH documentation built on May 18, 2019, 11:20 a.m.