vaccinate_by_current_seasonal_alloc: allocate vaccines according to current seasonal allocation

In jameshay218/vaxedemic: Optimal allocation of vaccination during a pandemic

Description

allocate vaccines according to current seasonal allocation in each location, then allocate uniformly within each country (without discriminating between ages/risk groups/infection statuses)

Usage

vaccinate_by_current_seasonal_alloc(sum_age_risk_func, travel_matrix,
  vax_allocation_params, S, E, I, R, SV, EV, IV, RV, incidence, vax_pool)

Arguments

sum_age_risk_func	a function which sums a vector across age and risk groups (created automatically in the code)
travel_matrix	a square matrix with side length n_countries. Travel_matrix[x,y] is the proportion of time an individual in location x spends in location y
vax_allocation_params	list of parameters for vaccine allocation
S	numeric vector of length n. number of unvaccinated susceptibles. n is number of locations * number of age groups * number of risk groups
E	numeric vector of length n. number of unvaccinated exposed
I	numeric vector of length n. number of unvaccinated infectious
R	numeric vector of length n. number of unvaccinated recovered
SV	numeric vector of length n. number of vaccinated susceptibles.
EV	numeric vector of length n. number of vaccinated exposed
IV	numeric vector of length n. number of vaccinated infectious
RV	numeric vector of length n. number of vaccinated recovered
incidence	numeric vector of length n. incidence
vax_pool	numeric vector of length 1. number of vaccines available

Value

n_vax_allocated numeric vector of length n_countries. number of vaccines allocated to each country

jameshay218/vaxedemic documentation built on Jan. 30, 2020, 2:58 a.m.