generateAllowableParams: Generate allowable starting parameters
In jameshay218/zikaProj: zikaInfer

Given a desirable SEIR peak time and time window, generates a set of R0 and t0 parameters that satisfy this peak time

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generateAllowableParams(peakTime = 927, peakTimeRange = 60, stateNames,
  parTab = NULL, allowableParsFile = "allowablePars.csv", R0max = 6.5,
  peakTimings = NULL)

`peakTime`	the desired central peak time. Defaults to 927
`peakTimeRange`	the desired allowable peak time range (ie. square prior)
`stateNames`	the set of Brazilian states for which allowable parameters should be generated. Must match those in the microDatFile
`parTab`	the parameter table as returned by `setupParTable`
`allowableParsFile`	file location for the allowable parameters table, if it exists.
`peakTimings`	Optional data frame providing a specific upper and lower peak time bound for each state
`microDatFile`	the location of the microcephaly data file which is needed to obtain N_H and L_H for each state. Note that this is only needed if no parTab is provided

a table of allowable parameters with columns for t0, mosquito density (R0), corresponding state (as this will vary by N_H and life expectancy), and corresponding peak time

jameshay218/zikaProj documentation built on Jan. 9, 2020, 7:26 p.m.