Description Usage Arguments Value
Given all of the parameters needed to solve the SEIR model, produces a data frame of simulated microcephaly affected births for multiple states. Produces data for each unique state in the parTab argument.
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parTab |
Table of all parameters needed to solve the SEIR model and microcephaly simulation for each unique state. See |
weeks |
Defaults to FALSE. If true. returns weekly microcephaly births rather than by month. |
dataRangeMicro |
a vector with lower and upper bounds on days for simulated microcephaly data |
dataRangeInc |
a vector with lower and upper bounds on days for simulated ZIKV incidence data |
noise |
bool indicating if noise should be added to the data |
peakTimeRange |
the allowable prior range for ZIKV incidence peak time |
solver |
which ODE solver to use, either "rlsoda" or "lsoda" |
t_pars |
vector of two components - the total run time in days and the time step for the ODE solver |
a data frame of microcephaly births, total births and corresponding times; a data frame of ZIKV incidence data; a data frame describing the ZIKV epidemic peak times for each location included in the simulation
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