generate_multiple_data: Simulation multi-state microcephaly and incidence data
In jameshay218/zikaProj: zikaInfer

Given all of the parameters needed to solve the SEIR model, produces a data frame of simulated microcephaly affected births for multiple states. Produces data for each unique state in the parTab argument.

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generate_multiple_data(ts = seq(0, 3003, by = 1), parTab, weeks = FALSE,
  dataRangeMicro, dataRangeInc, noise = FALSE, peakTimeRange = NULL,
  solver = "rlsoda")

`parTab`	Table of all parameters needed to solve the SEIR model and microcephaly simulation for each unique state. See `setupParTable`
`weeks`	Defaults to FALSE. If true. returns weekly microcephaly births rather than by month.
`dataRangeMicro`	a vector with lower and upper bounds on days for simulated microcephaly data
`dataRangeInc`	a vector with lower and upper bounds on days for simulated ZIKV incidence data
`noise`	bool indicating if noise should be added to the data
`peakTimeRange`	the allowable prior range for ZIKV incidence peak time
`solver`	which ODE solver to use, either "rlsoda" or "lsoda"
`t_pars`	vector of two components - the total run time in days and the time step for the ODE solver

a data frame of microcephaly births, total births and corresponding times; a data frame of ZIKV incidence data; a data frame describing the ZIKV epidemic peak times for each location included in the simulation

jameshay218/zikaProj documentation built on Jan. 9, 2020, 7:26 p.m.