D3Dendro: D3 Dendrogram

In jamesthomson/R2D3: Converts R objects and data frames to json and produces D3.js visualisations

Description

Creates a html file containing json file and a D3.js Dendrogram

Usage

D3Dendro(JSON, file_out, height = 800, width = 700,
  radial.diameter = 1600, collapsible = FALSE, radial = FALSE)

Arguments

JSON	A json object
file_out	the location and name for the output html file
height	the height of the dendrogram
width	the width of the dendrogram
radial.diameter	The diameter of your radial visualisation. Only needed (and used) when radial=TRUE
collapsible	Logical TRUE/FALSE as to whether you want the visualisation to be collapsible with a single-click on the nodes
radial	Logical TRUE/FALSE as to whether you want the dendrogram to be radial.

Author(s)

James Thomson & Andrew Patterson

References

Mike Bostock's lovely d3: http://d3js.org/ and Captain Anonymous' collapsible radial dendrogram here: http://codepen.io/anon/pen/xItvw

Examples

hc <- hclust(dist(USArrests), "ave")
plot(hc)
JSON<-jsonHC(hc)
D3Dendro(JSON,width=400, file_out="USArrests_Dendo.html")
D3Dendro(JSON,collapsible=TRUE,file_out="USArrests_Dendo_collapse.html")
D3Dendro(JSON,collapsible=FALSE,radial=TRUE, file_out="USArrests_Dendo_radial.html")
D3Dendro(JSON,collapsible=TRUE,radial=TRUE,file_out="USArrests_Dendo_collapse_radial.html")

jamesthomson/R2D3 documentation built on May 18, 2019, 11:21 a.m.