Description Usage Arguments Value See Also
View source: R/PermuteMultiHits.R
An internal function called by denovolyzeMultiHits
1 2 | PermuteMultiHits(x, y, nperms = 100, class = "lof", geneId = "geneName",
includeGenes = "all", probTable = pDNM)
|
x |
Total number of de novo variants observed in dataset |
y |
Number of genes with >1 de novo variant (of class "class") in the population |
nperms |
Number permutations |
class |
In c("lof","mis","syn","prot") |
geneId |
Gene identifier used. One of "hgncID", "hgncSymbol", "enstID", "ensgID" or "geneName" (default, equals ensembl "external_gene_name") |
includeGenes |
Genes to include in analysis. "all" or a vector of gene names. |
probTable |
Probability table. A user-defined table of probabilities can be provided here, to replace the probability table included in the package. |
Returns a named vector of 5 values
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