| adjust_rate | Adjust rates to account for background respiration or oxygen... |
| adjust_rate.ft | Adjust rates in flowthrough respirometry to account for... |
| adjust_scale | Convert between multipliers of the same unit, e.g. mg to kg |
| adjust_scale_area | Convert between multipliers of the same AREA unit, e.g. mm2... |
| algae.rd | Oxygen production respirometry data |
| auto_rate | Automatically determine most linear, highest, lowest and... |
| auto_rate_highest | Perform rolling regression and rank from ABSOLUTE highest to... |
| auto_rate.int | Run auto_rate on multiple replicates in intermittent-flow... |
| auto_rate_interval | Obtain rate values at non-overlapping intervals of a dataset |
| auto_rate_linear | Linear detection method |
| auto_rate_lowest | Perform rolling regression and rank from ABSOLUTE lowest to... |
| auto_rate_max | Perform rolling regression and rank from NUMERICAL maximum to... |
| auto_rate_min | Perform rolling regression and rank from NUMERICAL minimum to... |
| auto_rate.rep | Function for auto_rate with replicate number in summary plus... |
| auto_rate_rolling | Perform rolling regression of fixed width and do not reorder... |
| background_con.rd | Background respirometry data (constant) |
| background_exp.rd | Background respirometry data (exponential) |
| background_lin.rd | Background respirometry data (linear) |
| broken_stick | Perform broken-stick regressions |
| calc_rate | Calculate rate of change in oxygen over time |
| calc_rate.bg | Calculate background oxygen uptake or input rates |
| calc_rate.ft | Calculate rate of change in oxygen from flowthrough... |
| calc_rate.int | Extract rates from multiple replicates in intermittent-flow... |
| calc_rate.rep | Function for calc_rate with replicate number in summary |
| calc_win | Automatically calculate rolling window |
| class.val | Validates acceptable classes of inputs Set single or multiple... |
| convert_DO | Convert between units of dissolved oxygen |
| convert_MR | Convert between units of absolute, mass-specific, or... |
| convert_MR_print | Print results of convert_MR |
| convert_rate | Convert a unitless oxygen rate value to absolute,... |
| convert_rate.ft | Convert a unitless oxygen rate value from flowthrough... |
| convert_val | Convert values of temperature, volume, mass, area, and... |
| extract_indices | Extract row, time and DO indices from a subset dataframe |
| flowthrough_mult.rd | Multi-column flowthrough respirometry data |
| flowthrough.rd | Flowthrough respirometry data on the chiton, _Mopalia... |
| flowthrough_sim.rd | Flowthrough respirometry data with increasing background rate |
| flow_unit_parse | Extracts time and volume units from flowrate unit already... |
| format_time | Parse date-time data to numeric time for use in respR... |
| generate_mrdf | Generate a DO ~ PO2 data table from a DO timeseries |
| get_dec | Identify decimal character For European formatted files with... |
| grapes-greater-than-grapes | Pipe graphics direct from tidyverse-related package |
| import_file | Import respirometry system raw data files (DEPRECATED) |
| inspect | Explore and visualise respirometry data and check for common... |
| inspect.ft | Explore and visualise flowthrough respirometry data and check... |
| intermittent.rd | Respirometry data of the sea urchin, _Heliocidaris... |
| kernel_method | Kernel density function |
| linear_fit | Perform a linear regression on a data frame |
| mean.adjust_rate | Average adjust_rate object rates |
| mean.adjust_rate.ft | Average adjust_rate.ft rates |
| mean.auto_rate | Average auto_rate object rates |
| mean.auto_rate.int | Average auto_rate.int object rates |
| mean.calc_rate | Average calc_rate object rates |
| mean.calc_rate.bg | Average calc_rate.bg object rates |
| mean.calc_rate.ft | Average calc_rate.ft object rates |
| mean.calc_rate.int | Average calc_rate.int object rates |
| mean.convert_DO | Average convert_DO object values |
| mean.convert_rate | Average convert_rate object rates |
| mean.convert_rate.ft | Average convert_rate.ft object rates |
| mean.inspect | Average inspect object rates |
| mean.inspect.ft | Average inspect.ft object rates |
| mean.oxy_crit | Average oxy_crit object rates |
| method.val | Validate adjust_rate or auto_rate or oxy_crit method input |
| midpt | Get midpoint between two values or within a vector For... |
| nainf.omit | Omit NA, NaN, Inf and -Inf from a vector or dataframe columns |
| overlap.ft.p | Plot convert_rate.ft summary tables |
| overlap.p | Plot convert_rate and auto_rate summary tables |
| oxy_crit | Calculate critical oxygen values, such as PCrit |
| plot.adjust_rate | Plot adjust_rate objects |
| plot.adjust_rate.ft | Plot adjust_rate.ft objects |
| plot.auto_rate | Plot auto_rate objects |
| plot.auto_rate.int | Plot auto_rate.int objects |
| plot.calc_rate | Plot calc_rate objects |
| plot.calc_rate.bg | Plot calc_rate.bg objects |
| plot.calc_rate.ft | Plot calc_rate.ft objects |
| plot.calc_rate.int | Plot calc_rate.int objects |
| plot.convert_DO | Plot convert_DO objects |
| plot.convert_rate | Plot convert_rate objects |
| plot.convert_rate.ft | Plot convert_rate.ft objects |
| plot.inspect | Plot inspect objects |
| plot.inspect.ft | Plot inspect.ft objects |
| plot.oxy_crit | Plot oxy_crit objects |
| plot.test_lin | Plot output of test_lin |
| print.adjust_rate | Print adjust_rate objects |
| print.adjust_rate.ft | Print adjust_rate.ft objects |
| print.auto_rate | Print auto_rate objects |
| print.auto_rate.int | Print auto_rate.int objects |
| print.calc_rate | Print calc_rate objects |
| print.calc_rate.bg | Print calc_rate.bg objects |
| print.calc_rate.ft | Print calc_rate.ft objects |
| print.calc_rate.int | Print calc_rate.int objects |
| print.convert_DO | Print convert_DO objects |
| print.convert_rate | Print convert_rate objects |
| print.convert_rate.ft | Print convert_rate.ft objects |
| print_dens | Prints the density object for summary.auto_rate S3 Basically... |
| print.inspect | Print inspect objects |
| print.inspect.ft | Print inspect.ft objects |
| print.oxy_crit | Print oxy_crit objects |
| rolling_reg_row | Perform regular rolling regression |
| rolling_reg_time | Perform rolling regression based on time units. |
| sardine.rd | Respirometry data of the sardine, _Sardinops sagax_ |
| select | Select columns |
| select_rate | Select rate results based on a range of criteria |
| sim_data | Randomly generate data for internal testing of 'auto_rate()"s... |
| squid.rd | Respirometry data of the squid, _Doryteuthis opalescens_ |
| static_roll | Normal rolling regression |
| StP.check | Checks if an oxygen concentration/pressure unit or metabolic... |
| StP.val | Returns an error message if an oxygen concentration/pressure... |
| subsample | Subsample a data frame object |
| subset_data | Subset a 'data.frame', 'inspect', or 'inspect.ft' object |
| summary.adjust_rate | Summarise adjust_rate objects |
| summary.adjust_rate.ft | Summarise adjust_rate.ft objects |
| summary.auto_rate | Summarise auto_rate objects |
| summary.auto_rate.int | Summarise auto_rate.int objects |
| summary.calc_rate | Summarise calc_rate objects |
| summary.calc_rate.bg | Summarise calc_rate.bg objects |
| summary.calc_rate.ft | Summarise calc_rate.ft objects |
| summary.calc_rate.int | Summarise calc_rate.int objects |
| summary.convert_DO | Summarise convert_DO objects |
| summary.convert_rate | Summarise convert_rate objects |
| summary.convert_rate.ft | Summarise convert_rate.ft objects |
| summary.inspect | Summarise inspect objects |
| summary.inspect.ft | Summarise inspect.ft objects |
| summary.oxy_crit | Summarise oxy_crit objects |
| test_lin | Perform 'auto_rate()' iteratively and extract performance... |
| time_lm | Subset data by time and perform a linear regression. |
| time_roll | Perform time-width rolling regression |
| unit_args | Print examples of unit inputs |
| units.clean | Cleans units from units.val to remove the suffix (.o2, .flow,... |
| units.val | Check unit string against allowed values. See util_fns.R file... |
| unit_type | Search for and classify units |
| unit_type_o1 | Search for and classify oxygen units as used in concentration... |
| urchins.rd | Multi-column respirometry data of the sea urchin,... |
| validate_auto_rate | Validation function for auto_rate |
| zeb_intermittent.rd | Respirometry data of a zebrafish, _Danio rerio_ |
