convert_val: Convert values of temperature, volume, mass, area, and...

In januarharianto/respR: Import, Process, Analyse, and Calculate Rates from Respirometry Data

Convert values of temperature, volume, mass, area, and atmospheric pressure to different units

Description

This is a basic function that converts values of temperature, volume, mass, area, and atmospheric pressure to different units. This can be useful in convert_DO(), convert_rate(), and convert_rate.ft() where some inputs must be in specific units (e.g. temperature in °C, atmospheric pressure in bar, area in m2). See Examples.

Usage

convert_val(x, from = NULL, to = NULL)

Arguments

x	numeric value or vector. Values to be converted to a different unit.
from	string. Unit of the original values.
to	string. Unit to be converted to. These defaults are applied if left NULL: volume "L", temperature "C", mass "kg", area "m2", pressure "bar".

Details

Note the type of unit does not need to be specified. The function will automatically recognise it using the from unit.

If the 'to' input is left NULL, the following defaults are applied depending on the unit type of the from input:

• volume: "L"

• temperature: "C"

• mass: "kg"

• area: "m2"

• pressure: "bar"

A fuzzy string matching algorithm is used to accept different unit formatting styles. For example, "msq" "m2", "M2", "sqm" are all parsed as metres squared of area.

Accepted Units

Temperature:

• "C", "K", "F"

Pressure:

• "kPa", "hPa", "Pa", "ubar", "mbar", "bar", "Torr", "atm" (note, this is standard atmospheres).

Volume:

• "uL", "mL", "L"

Mass:

• "ug", "mg", "g", "kg"

Area:

• "mm2", "cm2", "m2", "km2"

More

For additional help, documentation, vignettes, and more visit the respR website at https://januarharianto.github.io/respR/

Value

Output is a numeric vector of converted values.

Examples

# Convert volume
convert_val(10, "ml", "L")
convert_val(10:15, "ml", "L")

# Convert temperature
convert_val(-273.15, "C", "K")
convert_val(-40, "C", "F")
convert_val(c(2,4,6,8), "C", "F")

# Convert pressure
convert_val(1, "atm", "bar")
convert_val(1010, "hpa", "bar")
convert_val(735, "torr", "kpa")

# Convert area
convert_val(100, "cm2", "m2")
convert_val(10000, "mm2", "cm2")

# Convert mass
convert_val(200, "g", "kg")
convert_val(10000, "ug", "mg")

# Use directly in a respR function which requires inputs to be
# in a specific unit. For example, in convert_rate() pressure
# must be in 'bar' and respirometer volume in 'L'.
# Here, we know chamber volume is 200 ml, and pressure measured in mbar.
x <- suppressWarnings(inspect(urchins.rd, 1, 2))

rate <- calc_rate(x, from = 20, to = 30)

convert_rate(rate,
             oxy.unit = "ml/l",
             time.unit = "min",
             output.unit = "mg/h",
             volume = convert_val(200, "ml", "L"),
             S = 35,
             t = 15,
             P = convert_val(1010, "mbar", "bar"))

# Note, the default 'to' units are set to those respR requires in
# these functions ('L' and 'bar' here), so do not necessarily need
# to be specified:
convert_rate(rate,
             oxy.unit = "ml/l",
             time.unit = "min",
             output.unit = "mg/h",
             volume = convert_val(200, "ml"),
             S = 35,
             t = 15,
             P = convert_val(1010, "mbar"))

januarharianto/respR documentation built on April 20, 2024, 4:34 p.m.