getGOrilla: Wrapper to run the online GO service GOrilla

In january3/myfuncs: loads a few functions I often need

Description

Wrapper to run the online GO service GOrilla

Usage

## S3 method for class 'GORilla'
print(g)

getGOrilla(x, y = NULL, ontology = "proc", species = "HOMO_SAPIENS",
  pval.thresh = 0.001, download = TRUE)

Arguments

x	character vector with sorted gene identifiers or (in two-list mode) the identifiers of differentially expressed genes
y	if in two list mode: character vector with gene identifiers of the background gene set
ontology	Ontology to use (proc, func or comp. Default: proc)
species	Can be HOMO_SAPIENS, ARABIDOPSIS_THALIANA, SACCHAROMYCES_CEREVISIAE, CAENORHABDITIS_ELEGANS, DROSOPHILA_MELANOGASTER, DANIO_RERIO, HOMO_SAPIENS, MUS_MUSCULUS or RATTUS_NORVEGICUS.
pval.thresh	The p-value threshold parameter. Allowed values: 1e-3, 1e-4, ..., 1e-11
download	Should getGOrilla attempt to download the data tables.
...	arguments to be passed to or from other methods.

Details

Wrapper to run the online GO service GOrilla

Value

An object of the class GORilla

january3/myfuncs documentation built on April 1, 2020, 4:42 a.m.