export: Export results

Description Usage Arguments Value

Description

Export data tables from Binalysis,MetaboProfile, Analysis and Assignment classes.

Usage

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exportData(x, outPath = ".", ...)

## S4 method for signature 'Binalysis'
exportData(x, outPath = ".")

## S4 method for signature 'MetaboProfile'
exportData(x, outPath = ".")

## S4 method for signature 'Analysis'
exportData(x, outPath = ".", type = "raw", idx = "name")

## S4 method for signature 'Assignment'
exportData(x, outPath = ".")

exportSampleInfo(x, outPath = ".", ...)

## S4 method for signature 'Binalysis'
exportSampleInfo(x, outPath = ".")

## S4 method for signature 'MetaboProfile'
exportSampleInfo(x, outPath = ".")

## S4 method for signature 'Analysis'
exportSampleInfo(x, outPath = ".", type = "raw")

exportAccurateData(x, outPath = ".")

## S4 method for signature 'Binalysis'
exportAccurateData(x, outPath = ".")

exportPeakInfo(x, outPath = ".")

## S4 method for signature 'MetaboProfile'
exportPeakInfo(x, outPath = ".")

exportModellingMetrics(x, outPath = ".")

## S4 method for signature 'Analysis'
exportModellingMetrics(x, outPath = ".")

exportModellingImportance(x, outPath = ".")

## S4 method for signature 'Analysis'
exportModellingImportance(x, outPath = ".")

exportModelling(x, outPath = ".")

## S4 method for signature 'Analysis'
exportModelling(x, outPath = ".")

exportCorrelations(x, outPath = ".")

## S4 method for signature 'Analysis'
exportCorrelations(x, outPath = ".")

exportAssignments(x, outPath = ".")

## S4 method for signature 'Assignment'
exportAssignments(x, outPath = ".")

exportSummarisedAssignments(x, outPath = ".")

## S4 method for signature 'Assignment'
exportSummarisedAssignments(x, outPath = ".")

export(x, outPath = ".", ...)

## S4 method for signature 'Binalysis'
export(x, outPath = ".")

## S4 method for signature 'MetaboProfile'
export(x, outPath = ".")

## S4 method for signature 'Analysis'
export(x, outPath = ".", type = "raw", idx = "name")

## S4 method for signature 'Assignment'
export(x, outPath = ".")

Arguments

x

S4 object of class Binalysis, MetaboProfile, Analysis or Assignment,

outPath

directory path to export to.

...

arguments to pass to relevant method

type

data type to extract. raw or pre-treated

idx

sample information column name to use as sample IDs

Value

A character vector of exported file paths.


jasenfinch/metaboMisc documentation built on Feb. 10, 2022, 4:22 p.m.