Man pages for jasonelaw/RIVPACS
Fit RIVPACS type models and calculate metrics from RIVPACS predictions
| biodiversity | Create a biodiversity data object |
| buildRIVPACS | Build a RIVPACS model |
| calculateExpected | Calculate the expected number of species at a site based on a... |
| calculateNullExpected | Calculate the expected number of species from a null model. |
| calculateOccurrenceProb | Probability of occurrence for each species in each group |
| calculateRIVPACSMetrics | Calculate RIVPACS metrics |
| castSampleData | Create a sample by taxa matrix from data in long format |
| collapseTaxa | Collapse sample data up to a list of higher level taxa. |
| matchTaxa | Make the taxa in two different sample * taxa matrices match |
| predict.rivpacs | Use a RIVPACS model to calculate metrics |
| predictSiteGroup | Posterior probability of group membership |
| rarify | Subsample samples of organisms to a fixed count |
| resample | Resample a vector |
