castSampleData: Create a sample by taxa matrix from data in long format

In jasonelaw/RIVPACS: Fit RIVPACS type models and calculate metrics from RIVPACS predictions

Create a sample by taxa matrix from data in long format

Description

Creates a sample by taxa matrix from data in long format

Usage

castSampleData(sample, taxon, count, transform.count = F)

Arguments

sample	a vector of sample/site indicatros
taxon	a vector of taxa indicators
count	a vector of counts (or 0/1 for presence absence data)
transform.count	logical, if T the counts are transformed to presence absence data

Examples

i <- sample(1:nrow(calibration), 10)
pred.data <- calibration[calibration$sample %in% c(1:5),]
setUpTaxonData(pred.data$sample, pred.data$taxon, pred.data$is.present,
calibration$group, calibration$sample, calibration$taxon, calibration$is.present)

jasonelaw/RIVPACS documentation built on Sept. 27, 2022, 6:34 p.m.