Man pages for jasonelaw/nrsa
Calculate metrics for NRSA protocol data.
| addWadeSubstrateSizes | Add substrate size variables to wadeable data |
| allCharToFac | Turns all character variables in a data frame to factors or... |
| calcGrade | Calculate the grade from rise and run |
| calculateAngleMetrics | Calculate slope and bearing metrics |
| calculateBankHardening | Calculates a bank hardening metric for City of Portland use. |
| calculateBoatableReachLength | Calculates the reach length for a boatable site |
| calculateBoatAngleMetrics | Calculate boat protocol bank angle metrics |
| calculateBoatNumberWettedWidth | Calculate boat protocol number of observed wetted widths |
| calculateBoatThalwegSubstrateMetrics | Calculate non-wadeable substrate metrics |
| calculateCanopyCover | Calculates Canopy Densiometer metrics |
| calculateChannelConstraint | Calculate the channel constraint metrics |
| calculateChannelHabitatProportions | Calculate channel habitat metrics |
| calculateChannelMetrics | Calculate channel metrics |
| calculateChannelMorphology | Calculate channel morphology metrics |
| calculateDistanceAlongThalweg | Calculate distance from sequence of station numbers and... |
| calculateFishCover | Calculate fish cover metrics |
| calculateFishIBI | Calculates Fish IBI |
| calculateHIWeightedSums | Calculate weighted human influence metrics |
| calculateHumanInfluence | Calculate human influence metrics |
| calculateHumanInfluenceSD | Calculate human influence standard deviation metrics |
| calculateInvasiveScore | Calculate total invasive score |
| calculateLittoralDepth | Calculate non-wadeable littoral depth metrics |
| calculateLWDCountMetrics | Calculate LWD metrics |
| calculateLWDCumulativeMetrics | Calculate cumulative LWD metrics |
| calculateLWDSiteArea | Calculate length of area sampled for LWD |
| calculateLWDSiteLength | Calculate length of area sampled for LWD |
| calculatePercentSideChannel | Proportion of side of reach with side channels. |
| calculatePool | Determine which depths in a vector of depths represent pools |
| calculatePoolMetrics | Calculate residual pool metrics |
| calculateProportionSeeOverBank | Calculates the proportion of the reach over which you can see... |
| calculatePropTranInvPresent | Calculates the invasive species metrics. |
| calculateRefinedCriticalDiameter | Calculate several versions of critical diameter: ltest,... |
| calculateRelativeBedStability | Calculate relative bed stability metrics. |
| calculateRiparianVegetation | Calculates visible riparian vegetation metrics. |
| calculateShoreToVegDistance | Calculates summaries of shore to vegetation distance |
| calculateSideChannelCount | Calculates number of side channel transects: 'sidecnt' |
| calculateS_RP100 | Not even sure what this modified metric is... |
| calculateSubstrateEmbed | Calculates Substrate Embeddedness metrics... |
| calculateThalwegDepthMetrics | Calculate thalweg depth metrics: xdepth, sddepth, n_d |
| calculateThalwegRatios | Calculate thalweg width depth ratios |
| calculateTransectRatios | Calculates metrics of bankfull width to (bankfull height +... |
| calculateWadeableReachLength | Calculates the reach length for a wadeable site |
| calculateWadeBankMetrics | Calculates wadeable bank metrics |
| calculateWadeSubstrateMetrics | Calculate wadeable substrate metrics |
| calculateWettedWidthMetrics | Calculates wetted width metrics |
| convertFactorToNumeric | A shortcut for the common idiom to turn factors back into the... |
| convertNamedVectorToMetricDF | Convert a named vector to a metric data.frame |
| coordinatesFromTraverse | Computes coordinates for a traverse |
| count.notna | Returns the number of non-missing values in the vector, |
| fillMissingLWD | Fill in missing LWD volume. |
| first | Identify the first and last elements for each run in a vector |
| fixBoatableDepthUnits | Convert boatable depth units from m to cm |
| forceSlopeGt0 | Make slope slightly positive |
| formatFishCover | Format fish cover data for calculations |
| formatRiparianVegetation | Format Riparian Vegetation data for calculations |
| getAngleFromDisplacement | Returns the angle from the y axis for a vector |
| getChannelConstraint | Formats the channel constraint form data as metrics |
| getPoolInformation | Determines basic information about a sequence of pools |
| gmean | Calculate the geometric mean |
| grapes-and-grapes | An AND operator that returns T for NA & T |
| identifyIncompleteSites | Identify incomplete sites |
| idr | Interdecile range |
| iqr | Interquartile range with default type = 2 |
| isSiteSampled | Determines whether a site was sampled from x site validation... |
| is.subset | Is the set a subset of another set. |
| joinExtraTransects | Join extra side channel transects |
| lag | Lag a vector |
| meltMetrics | Melts metric data |
| modalClass | Determines most common classes, based on counts for each... |
| modalvalue | Return the value which represents the mode |
| nrsa.options | Set nrsa package options |
| nrsa-package | Calculate National Rivers and Streams Assessment metrics. |
| nWadeableStations | Estimates the intended number of wadeable thalweg stations to... |
| observedLWDTransects | Calculate number of LWD observed transects |
| p2pDistance | Returns a vector of point to point distances for a line. |
| progressReport | Print a progress report |
| removeSideChannels | Removes side channels from a data frame |
| renameHumanInfluenceMetrics | Renames metrics for human influence |
| rescaleMetrics | Map fish IBI raw metric scores to rescaled subindex scores |
| residualDepth | Residual depths from a thalweg profile |
| rowSumsProtectNA | Protect rowSums from a row which is all NA; return NA instead... |
| which.is.max | Which value is the max |
| WoodClassesData | LWD class metadata |
