countsBySubject: Gene-by-subject count matrix

Description Usage Arguments Value See Also Examples

View source: R/summarize_counts.R

Description

Convert gene-by-cell count matrix to gene-by-subject count matrix. Row sums are calculated for each feature (i.e. gene) across cells by subject.

Usage

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countsBySubject(scExp, subjectVar)

Arguments

scExp

SingleCellExperiment object containing (at minimum) gene counts and column metadata describing sample identifiers and cell types.

subjectVar

Metadata column name assigning biological sample identity to aggregate within-subject feature counts.

Value

S4 DataFrame of gene-by-subject count sums.

See Also

scSubjects for subjects values.

Examples

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## Return cell count matrix aggregated by subject.
countsBySubject(scExp=small_airway, subjectVar="orig.ident")

jasonratcliff/aggregateBioVar documentation built on Sept. 29, 2020, 11:53 p.m.