Small airway epithelium single-cell RNA sequencing data subset combined from
7 porcine individuals. Genotypes represent wildtype (Genotype
and CFTR-knockout subjects (Genotype
CFTRKO; n=4) expressing a
cystic fibrosis phenotype.
To access cell counts and column metadata:
Cell types include:
A SingleCellExperiment object with feature counts of 1311 genes (rows) from 2687 individual cells (columns). Features were subset by gene ontology annotation "ion transport" with included child terms ("anion transport", "cation transport", etc.). Includes a count matrix accessed by assay and column metadata accessed by colData. Metadata variables are defined as:
Biological sample identifier (i.e. subject)
Number of UMIs (i.e. depth/size factor)
Features with non-zero counts (i.e. identified features)
Sample Genotype ('CF' == cystic fibrosis)
WT = non-CF pig
CFTRKO = CFTR knockout
Airway region of sample
Cell type labels
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