API for jasonserviss/sp.scRNAseqData
Data and processing functions for the CIMseq.data package
| Global functions | |
|---|---|
| .boolChecks_labelSingletsAndMultiplets | Source code |
| .dataframeChecks_labelSingletsAndMultiplets | Source code |
| .dataframeChecks_removeHTSEQsuffix | Source code |
| .inputChecks_labelSingletsAndMultiplets | Source code |
| .inputChecks_removeHTSEQsuffix | Source code |
| .norm.counts | Source code |
| .norm.log.counts | Source code |
| MGA.Counts | Man page |
| MGA.CountsERCC | Man page |
| MGA.Meta | Man page |
| MGAB.Counts | Man page |
| MGAB.CountsERCC | Man page |
| MGAB.Meta | Man page |
| RSI.Counts | Man page |
| RSI.CountsERCC | Man page |
| RSI.Meta | Man page |
| SCM.Counts | Man page |
| SCM.CountsERCC | Man page |
| SCM.Meta | Man page |
| TMD.Counts | Man page |
| TMD.CountsERCC | Man page |
| TMD.Meta | Man page |
| convertCountsToMatrix | Man page Source code |
| detectERCCreads | Man page Source code |
| detectLowQualityCells.ERCCfrac | Man page Source code |
| detectLowQualityCells.housekeeping | Man page Source code |
| detectLowQualityCells.totalCounts | Man page Source code |
| detectLowQualityGenes | Man page Source code |
| detectNonGenes | Man page Source code |
| filterCountsData | Man page Source code |
| getCountsData | Man page Source code |
| getMetadata | Man page Source code |
| labelSingletsAndMultiplets | Man page Source code |
| moveGenesToRownames | Man page Source code |
| processedDataUpload | Man page Source code |
| reformatWell | Man page Source code |
| removeHTSEQsuffix | Man page Source code |
| renameMgfpSamples | Man page Source code |
| saveRDA | Man page Source code |
| testingCounts | Man page |
| testingMeta | Man page |
