convertCountsToMatrix | convertCountsToMatrix |
detectERCCreads | detectERCCreads |
detectLowQualityCells.ERCCfrac | detectLowQualityCells.ERCCfrac |
detectLowQualityCells.housekeeping | detectLowQualityCells.housekeeping |
detectLowQualityCells.totalCounts | detectLowQualityCells.totalCounts |
detectLowQualityGenes | detectLowQualityGenes |
detectNonGenes | detectNonGenes |
filterCountsData | filterCountsData |
getCountsData | getCountsData |
getMetadata | getMetadata |
labelSingletsAndMultiplets | labelSingletsAndMultiplets |
MGAB.Counts | Counts data from mouse small intestine and colon bulk RNAseq. |
MGAB.CountsERCC | ERCC counts data from mouse small intestine and colon bulk... |
MGAB.Meta | Metadata from mouse small intestine and colon bulk RNAseq. |
MGA.Counts | Counts data from mouse small intestine and colon scRNAseq. |
MGA.CountsERCC | ERCC counts data from mouse small intestine and colon... |
MGA.Meta | Metadata from mouse small intestine and colon scRNAseq. |
moveGenesToRownames | moveGenesToRownames |
processedDataUpload | processedDataUpload |
reformatWell | Reformat wells |
removeHTSEQsuffix | removeHTSEQsuffix |
renameMgfpSamples | Rename GFP mouse samples. |
RSI.Counts | Counts data from GSE92332 for mouse small intestine. |
RSI.CountsERCC | Counts data from GSE92332 for mouse small intestine. |
RSI.Meta | Counts data from GSE92332 for mouse small intestine. |
saveRDA | saveRDA |
SCM.Counts | Counts data from sorted multiplets; experiment 2. |
SCM.CountsERCC | ERCC counts data from sorted multiplets; experiment 2. |
SCM.Meta | Counts data from sorted multiplets; experiment 2. |
testingCounts | Simulated data used for testing and demos. |
testingMeta | Data for testing metadata processing functions. |
TMD.Counts | Counts data from mouse colon in Tabula Muris study. |
TMD.CountsERCC | ERCC counts data from mouse colon in Tabula Muris study. |
TMD.Meta | Metadata from mouse colon in Tabula Muris study. |
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