Man pages for jasonserviss/sp.scRNAseqData
Data and processing functions for the sp.scRNAseqTesting package

annotateCellNumberAnnotate cell numbers.
annotateColumnAnnotate column.
annotateGFPAnnotate sample GFP status.
annotateMouseAnnotate mouse.
annotatePlateAnnotate plate.
annotateRowAnnotate row.
annotateTissueAnnotate tissue.
convertCountsToMatrixconvertCountsToMatrix
countsErccFpFetal pancreas ERCC counts data.
countsFpFetal pancreas counts data.
countsMgfpCounts data from the GFP-Lgr5 mouse small intestine and...
countsMgfpERCCERCC counts data from the GFP-Lgr5 mouse small intestine and...
countsMgfpMetaMetadata from the GFP-Lgr5 mouse small intestine and colon.
countsRegevCounts data from GSE92332 for mouse small intestine.
countsSorted1Counts data for sorted multiplets; experiment 1.
countsSorted2Counts data from sorted multiplets; experiment 2.
countsSorted2_cellTypesAnnotate cell types in each well for the countsSorted2 data.
countsSortedERCC1ERCC counts data for sorted multiplets; experiment 1.
countsSortedERCC2ERCC counts data from sorted multiplets; experiment 2.
countsSortedMeta2Counts data from sorted multiplets; experiment 2.
detectERCCreadsdetectERCCreads
detectLowQualityCellsdetectLowQualityCells
detectLowQualityGenesdetectLowQualityGenes
detectNonGenesdetectNonGenes
labelSingletsAndMultipletslabelSingletsAndMultiplets
loadMetaDataLoad meta data.
moveGenesToRownamesmoveGenesToRownames
removeHTSEQsuffixremoveHTSEQsuffix
renameMgfpSamplesRename GFP mouse samples.
testingCountsSimulated data used for testing and demos.
testingMetaData for testing metadata processing functions.
writeMetaDataWrite meta data.
jasonserviss/sp.scRNAseqData documentation built on April 12, 2018, 10:29 p.m.