Man pages for jasonserviss/sp.scRNAseqData
Data and processing functions for the sp.scRNAseqTesting package

ADM.CountsCounts, ERCC, and metadata from the AOM/DSS mouse.
ADM.CountsERCCCounts, ERCC, and metadata from the AOM/DSS mouse.
ADM.MetaCounts, ERCC, and metadata from the AOM/DSS mouse.
convertCountsToMatrixconvertCountsToMatrix
detectERCCreadsdetectERCCreads
detectLowQualityCells.ERCCfracdetectLowQualityCells.ERCCfrac
detectLowQualityCells.housekeepingdetectLowQualityCells.housekeeping
detectLowQualityCells.totalCountsdetectLowQualityCells.totalCounts
detectLowQualityGenesdetectLowQualityGenes
detectNonGenesdetectNonGenes
filterCountsDatafilterCountsData
getCountsDatagetCountsData
getMetadatagetMetadata
HFP.CountsFetal pancreas counts data.
HFP.CountsERCCFetal pancreas ERCC data.
HFP.MetaFetal pancreas metadata.
labelSingletsAndMultipletslabelSingletsAndMultiplets
MGA.CountsCounts data from the GFP-Lgr5 mouse small intestine and...
MGA.CountsERCCERCC counts data from the GFP-Lgr5 mouse small intestine and...
MGA.MetaMetadata from the GFP-Lgr5 mouse small intestine and colon.
moveGenesToRownamesmoveGenesToRownames
processedDataUploadprocessedDataUpload
removeHTSEQsuffixremoveHTSEQsuffix
renameMgfpSamplesRename GFP mouse samples.
RSI.CountsCounts data from GSE92332 for mouse small intestine.
RSI.CountsERCCCounts data from GSE92332 for mouse small intestine.
RSI.MetaCounts data from GSE92332 for mouse small intestine.
saveRDAsaveRDA
SCM.CountsCounts data from sorted multiplets; experiment 2.
SCM.CountsERCCERCC counts data from sorted multiplets; experiment 2.
SCM.MetaCounts data from sorted multiplets; experiment 2.
testingCountsSimulated data used for testing and demos.
testingMetaData for testing metadata processing functions.
jasonserviss/sp.scRNAseqData documentation built on Oct. 12, 2018, 7 a.m.