Files in jasonserviss/sp.scRNAseqData
Data and processing functions for the CIMseq.data package

.Rbuildignore
.dockerignore
.gitattributes
.gitignore
.travis.yml
CIMseq.data.Rproj
DESCRIPTION
Dockerfile
NAMESPACE
NEWS
R/Aom.dss.mouse_ADM.R R/Human.Fetal.pancreas_HFP.R R/Mouse.gut.architecture.bulk_MGAB.R R/Mouse.gut.architecture_MGA.R R/Regev.mouse.small.intestine_RSI.R R/Sorted.cell.line.multiplets_SCM.R R/Tabula.muris.data_TMD.R R/countFuns.R R/countsSorted1.R R/processingFuns.R R/testingCounts.R R/testingMeta.R README.md
codecov.yml
data/testingCounts.rda
data/testingMeta.rda
inst/extData/gd.rds
inst/rawData/Aom.dss.mouse_ADM.R inst/rawData/Human.fetal.pancreas_HFP.R inst/rawData/Mouse.gut.architecture.bulk_MGAB.R inst/rawData/Mouse.gut.architecture_MGA.R inst/rawData/Regev.mouse.small.intestine_RSI.R inst/rawData/Sorted.cell.line.multiplets_SCM/Sorted.cell.line.multiplets_SCM.R
inst/rawData/Sorted.cell.line.multiplets_SCM/cellLineMultipletsLayout_171116.png
inst/rawData/Sorted.cell.line.multiplets_SCM/cellLineSingletsLayout_171116.png
inst/rawData/Tabula.muris.data_TMD.R
inst/rawData/countsSorted1/cellLineMultipletsSetup_171018.png
inst/rawData/countsSorted1/countsSorted1_171018.R inst/rawData/permutations_171116/permutations.R inst/rawData/processRaw.R inst/rawData/syntheticData/syntheticData.R inst/rawData/testingCounts_TC.R inst/rawData/testingMeta_TM.R man/MGA.Counts.Rd man/MGA.CountsERCC.Rd man/MGA.Meta.Rd man/MGAB.Counts.Rd man/MGAB.CountsERCC.Rd man/MGAB.Meta.Rd man/RSI.Counts.Rd man/RSI.CountsERCC.Rd man/RSI.Meta.Rd man/SCM.Counts.Rd man/SCM.CountsERCC.Rd man/SCM.Meta.Rd man/TMD.Counts.Rd man/TMD.CountsERCC.Rd man/TMD.Meta.Rd man/convertCountsToMatrix.Rd man/detectERCCreads.Rd man/detectLowQualityCells.ERCCfrac.Rd man/detectLowQualityCells.housekeeping.Rd man/detectLowQualityCells.totalCounts.Rd man/detectLowQualityGenes.Rd man/detectNonGenes.Rd man/filterCountsData.Rd man/getCountsData.Rd man/getMetadata.Rd man/labelSingletsAndMultiplets.Rd man/moveGenesToRownames.Rd man/processedDataUpload.Rd man/reformatWell.Rd man/removeHTSEQsuffix.Rd man/renameMgfpSamples.Rd man/saveRDA.Rd man/testingCounts.Rd man/testingMeta.Rd tests/testthat.R tests/testthat/test_countFuns.R
vignettes/.gitignore
vignettes/filteringcounts.Rmd
jasonserviss/sp.scRNAseqData documentation built on Jan. 8, 2020, 11:46 a.m.