Files in jasonserviss/sp.scRNAseqData
Data and processing functions for the CIMseq.data package
.Rbuildignore
.dockerignore
.gitattributes
.gitignore
.travis.yml
CIMseq.data.Rproj
DESCRIPTION
Dockerfile
NAMESPACE
NEWS
R/Aom.dss.mouse_ADM.R
R/Human.Fetal.pancreas_HFP.R
R/Mouse.gut.architecture.bulk_MGAB.R
R/Mouse.gut.architecture_MGA.R
R/Regev.mouse.small.intestine_RSI.R
R/Sorted.cell.line.multiplets_SCM.R
R/Tabula.muris.data_TMD.R
R/countFuns.R
R/countsSorted1.R
R/processingFuns.R
R/testingCounts.R
R/testingMeta.R
README.md
codecov.yml
data/testingCounts.rda
data/testingMeta.rda
inst/extData/gd.rds
inst/rawData/Aom.dss.mouse_ADM.R
inst/rawData/Human.fetal.pancreas_HFP.R
inst/rawData/Mouse.gut.architecture.bulk_MGAB.R
inst/rawData/Mouse.gut.architecture_MGA.R
inst/rawData/Regev.mouse.small.intestine_RSI.R
inst/rawData/Sorted.cell.line.multiplets_SCM/Sorted.cell.line.multiplets_SCM.R
inst/rawData/Sorted.cell.line.multiplets_SCM/cellLineMultipletsLayout_171116.png
inst/rawData/Sorted.cell.line.multiplets_SCM/cellLineSingletsLayout_171116.png
inst/rawData/Tabula.muris.data_TMD.R
inst/rawData/countsSorted1/cellLineMultipletsSetup_171018.png
inst/rawData/countsSorted1/countsSorted1_171018.R
inst/rawData/permutations_171116/permutations.R
inst/rawData/processRaw.R
inst/rawData/syntheticData/syntheticData.R
inst/rawData/testingCounts_TC.R
inst/rawData/testingMeta_TM.R
man/MGA.Counts.Rd
man/MGA.CountsERCC.Rd
man/MGA.Meta.Rd
man/MGAB.Counts.Rd
man/MGAB.CountsERCC.Rd
man/MGAB.Meta.Rd
man/RSI.Counts.Rd
man/RSI.CountsERCC.Rd
man/RSI.Meta.Rd
man/SCM.Counts.Rd
man/SCM.CountsERCC.Rd
man/SCM.Meta.Rd
man/TMD.Counts.Rd
man/TMD.CountsERCC.Rd
man/TMD.Meta.Rd
man/convertCountsToMatrix.Rd
man/detectERCCreads.Rd
man/detectLowQualityCells.ERCCfrac.Rd
man/detectLowQualityCells.housekeeping.Rd
man/detectLowQualityCells.totalCounts.Rd
man/detectLowQualityGenes.Rd
man/detectNonGenes.Rd
man/filterCountsData.Rd
man/getCountsData.Rd
man/getMetadata.Rd
man/labelSingletsAndMultiplets.Rd
man/moveGenesToRownames.Rd
man/processedDataUpload.Rd
man/reformatWell.Rd
man/removeHTSEQsuffix.Rd
man/renameMgfpSamples.Rd
man/saveRDA.Rd
man/testingCounts.Rd
man/testingMeta.Rd
tests/testthat.R
tests/testthat/test_countFuns.R
vignettes/.gitignore
vignettes/filteringcounts.Rmd
