R/countsSorted1.R

In jasonserviss/sp.scRNAseqData: Data and processing functions for the CIMseq.data package

#' #' Counts and ERCC matrix for sorted cell lines.
#' #'
#' #' The HOS, HCT116, and A375 cell lines were FACS sorted, either as
#' #' singlets or multiplets, and sequenced. Multiplets were sequenced into known
#' #' combinations in order to know which connections are contained in each
#' #' multiplet. Note that many of the ERCC read fractions did not look good for
#' #' many of the cells from this experiment (171018) and the sort and sequencing
#' #' was repeated. The results from the repeated experiment are in the
#' #' countsSorted2 dataset.
#' #'
#' #' @title Counts data for sorted multiplets; experiment 1.
#' #' @docType data
#' #' @name countsSorted1
#' #' @format Matrix containing counts with:
#' #' \describe{
#' #' \item{rownames}{Gene names}
#' #' \item{colnames}{Samples/cells}
#' #' }
#' #' @keywords datasets
#' #' @examples
#' #' data(countsSorted1)
#' #'
#' "countsSorted1"
#'
#' #' Counts and ERCC matrix for sorted cell lines.
#' #'
#' #' The HOS, HCT116, and A375 cell lines were FACS sorted, either as
#' #' singlets or multiplets, and sequenced. Multiplets were sequenced into known
#' #' combinations in order to know which connections are contained in each
#' #' multiplet. Note that many of the ERCC read fractions did not look good for
#' #' many of the cells from this experiment (171018) and the sort and sequencing
#' #' was repeated. The results from the repeated experiment are in the
#' #' countsSorted2 dataset.
#' #'
#' #' @title ERCC counts data for sorted multiplets; experiment 1.
#' #' @docType data
#' #' @name countsSortedERCC1
#' #' @format Matrix containing ERCC counts, with:
#' #' \describe{
#' #' \item{rownames}{Gene names}
#' #' \item{colnames}{Samples/cells}
#' #' }
#' #' @keywords datasets
#' #' @examples
#' #' data(countsSortedERCC1)
#' #'
#' "countsSortedERCC1"