detectERCCreads: detectERCCreads
In jasonserviss/sp.scRNAseqData: Data and processing functions for the CIMseq.data package
Description
Arguments
Value
Author(s)
Examples
Description
Detects the 92 ERCC reads in the rownames of the counts data.frame. ERCC
reads must be named with the standard naming convention that matches the
regex "^ERCC\-[0-9]*$".
Arguments
counts
data.frame; A data frame with counts data with gene names as
rownames.
Value
A logical vector with length = nrow(counts) that is TRUE when the
counts data.frame row contains an ERCC read. A warning is issued if all 92
ERCC reads are not detected.
Author(s)
Jason Serviss
Examples
1
2
counts <- data.frame(runif(100), row.names = c(1:8, paste0("ERCC-", 1:92)))
detectERCCreads(counts)
jasonserviss/sp.scRNAseqData documentation built on Jan. 8, 2020, 11:46 a.m.
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Description Arguments Value Author(s) Examples
Description
Detects the 92 ERCC reads in the rownames of the counts data.frame. ERCC reads must be named with the standard naming convention that matches the regex "^ERCC\-[0-9]*$".
Arguments
counts |
data.frame; A data frame with counts data with gene names as rownames. |
Value
A logical vector with length = nrow(counts) that is TRUE when the counts data.frame row contains an ERCC read. A warning is issued if all 92 ERCC reads are not detected.
Author(s)
Jason Serviss
Examples
1 2 | counts <- data.frame(runif(100), row.names = c(1:8, paste0("ERCC-", 1:92)))
detectERCCreads(counts)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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