Man pages for jasonserviss/sp.scRNAseqData
Data and processing functions for the CIMseq.data package
| convertCountsToMatrix | convertCountsToMatrix |
| detectERCCreads | detectERCCreads |
| detectLowQualityCells.ERCCfrac | detectLowQualityCells.ERCCfrac |
| detectLowQualityCells.housekeeping | detectLowQualityCells.housekeeping |
| detectLowQualityCells.totalCounts | detectLowQualityCells.totalCounts |
| detectLowQualityGenes | detectLowQualityGenes |
| detectNonGenes | detectNonGenes |
| filterCountsData | filterCountsData |
| getCountsData | getCountsData |
| getMetadata | getMetadata |
| labelSingletsAndMultiplets | labelSingletsAndMultiplets |
| MGAB.Counts | Counts data from mouse small intestine and colon bulk RNAseq. |
| MGAB.CountsERCC | ERCC counts data from mouse small intestine and colon bulk... |
| MGAB.Meta | Metadata from mouse small intestine and colon bulk RNAseq. |
| MGA.Counts | Counts data from mouse small intestine and colon scRNAseq. |
| MGA.CountsERCC | ERCC counts data from mouse small intestine and colon... |
| MGA.Meta | Metadata from mouse small intestine and colon scRNAseq. |
| moveGenesToRownames | moveGenesToRownames |
| processedDataUpload | processedDataUpload |
| reformatWell | Reformat wells |
| removeHTSEQsuffix | removeHTSEQsuffix |
| renameMgfpSamples | Rename GFP mouse samples. |
| RSI.Counts | Counts data from GSE92332 for mouse small intestine. |
| RSI.CountsERCC | Counts data from GSE92332 for mouse small intestine. |
| RSI.Meta | Counts data from GSE92332 for mouse small intestine. |
| saveRDA | saveRDA |
| SCM.Counts | Counts data from sorted multiplets; experiment 2. |
| SCM.CountsERCC | ERCC counts data from sorted multiplets; experiment 2. |
| SCM.Meta | Counts data from sorted multiplets; experiment 2. |
| testingCounts | Simulated data used for testing and demos. |
| testingMeta | Data for testing metadata processing functions. |
| TMD.Counts | Counts data from mouse colon in Tabula Muris study. |
| TMD.CountsERCC | ERCC counts data from mouse colon in Tabula Muris study. |
| TMD.Meta | Metadata from mouse colon in Tabula Muris study. |
