FFT.replicate: Replicate the function 'FFT.run'

In jasonxu90/bdsem: Analysis of discretely observed Birth-Death-Shift processes

Description

This function does the same as FM.replicate, but optimizes the likelihood based on transition probabilities computed by the generating function method instead of using frequent monitoring. An example of usage is included in the vignette.

Usage

  FFT.replicate(numReps, N, tList, lam, v, mu, initList,
    initGuess, s1.seq, s2.seq)

Arguments

numReps	The number of replications
N	An integer specifying the number of observation intervals/realization from the simple BSD process.
tList	A list of observation interval lengths. The number of datasets returned is equal to the length of tList
lam	Per-particle birth rate
v	Per-particle shift rate
mu	Per-particle death rate
initList	A vector containing possible initial population sizes
initGuess	A vector containing the initial guess of birth, shift, and death rates
s1.seq	A vector of complex arguments evenly spaced along the unit circle
s2.seq	A vector of complex arguments evenly spaced along the unit circle

Value

An array of optim objects in the same layout as FM.replicate

jasonxu90/bdsem documentation built on May 18, 2019, 5:54 p.m.