R/contingencytablesWrapper.R

In jasp-stats/jaspFrequencies: Frequencies Module for JASP

#
# Copyright (C) 2013-2024 University of Amsterdam
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
#

# This is a generated file. Don't change it

ContingencyTables <- function(
          data = NULL,
          version = "0.19.2",
          formula = NULL,
          byIntervalEta = FALSE,
          chiSquared = TRUE,
          chiSquaredContinuityCorrection = FALSE,
          cochranAndMantel = FALSE,
          columnOrder = "ascending",
          columns = list(types = list(), value = NULL),
          contingencyCoefficient = FALSE,
          counts = list(types = list(), value = ""),
          countsExpected = FALSE,
          countsHiddenSmallCounts = FALSE,
          countsHiddenSmallCountsThreshold = 5,
          gamma = FALSE,
          kendallsTauB = FALSE,
          kendallsTauC = FALSE,
          lambda = FALSE,
          layers = list(),
          likelihoodRatio = FALSE,
          oddsRatio = FALSE,
          oddsRatioAlternative = "twoSided",
          oddsRatioAsLogOdds = TRUE,
          oddsRatioCiLevel = 0.95,
          percentagesColumn = FALSE,
          percentagesRow = FALSE,
          percentagesTotal = FALSE,
          phiAndCramersV = FALSE,
          plotHeight = 320,
          plotWidth = 480,
          residualsPearson = FALSE,
          residualsStandardized = FALSE,
          residualsUnstandardized = FALSE,
          rowOrder = "ascending",
          rows = list(types = list(), value = NULL),
          somersD = FALSE,
          testOddsRatioEquals = 1,
          uncertaintyCoefficient = FALSE,
          vovkSellke = FALSE,
          zTestAdjustedPValues = FALSE,
          zTestColumnComparison = FALSE) {

   defaultArgCalls <- formals(jaspFrequencies::ContingencyTables)
   defaultArgs <- lapply(defaultArgCalls, eval)
   options <- as.list(match.call())[-1L]
   options <- lapply(options, eval)
   defaults <- setdiff(names(defaultArgs), names(options))
   options[defaults] <- defaultArgs[defaults]
   options[["data"]] <- NULL
   options[["version"]] <- NULL

   if (!is.null(formula)) {
      if (!inherits(formula, "formula")) {
         formula <- as.formula(formula)
      }
      options$formula <- jaspBase::jaspFormula(formula, data)
   }

   optionsWithFormula <- c("columns", "counts", "layers", "rows")
   for (name in optionsWithFormula) {
      if ((name %in% optionsWithFormula) && inherits(options[[name]], "formula")) options[[name]] = jaspBase::jaspFormula(options[[name]], data)   }

   return(jaspBase::runWrappedAnalysis("jaspFrequencies::ContingencyTables", data, options, version))
}