mseAnalysis: mseAnalysis

In jaspershen/sxtTools: All the usefull tools from Xiaotao Shen

Description

Metabolite sets enrichment analysis.

Usage

mseAnalysis(
  metabolite.id,
  species = c("hsa", "dme", "mmu", "rat", "bta", "gga", "dre", "cel", "sce", "ath",
    "smm", "pfa", "tbr", "eco", "ppu", "syf"),
  test.method = c("hypergeometric", "fisher")
)

Arguments

metabolite.id	The vector of metabolite IDs.
species	The species. "hsa" is Homo sapiens (human), "dme" is Drosophlia melanogaster (fruit fly), "mmu" is Mus musculus (mouse), "rat" is Rattus norvegicus (rat), "bta" is Bos taurus (cow), "gga" is Gallus domesticus (chicken), "dre" is Danio rerio (zebrafish), "cel" is Caenorharomyces elegans (nematode), "sce" is Saccharomyces cerevisaiae (yeast), "ath" is Arabidopsis thaliana (thale cress), "smm" is Schistosoma mansoni, "pfa" is Plasmodum falciparum 3D7, "tbr" is Trypanosoma brucei, "eco" is Escherichia coli K-12 MG1655, "ppu" is Pseudomonas putida KT2440, "syf" is Synechococcus elongatus.
test.method	Hypergeometric or fisher test.

Value

The MSE analysis result.

Author(s)

Xiaotao Shen [e-mail]

jaspershen/sxtTools documentation built on May 2, 2020, 6:37 a.m.